PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.R0657

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 211aa MW: 23678.6 Da PI: 9.8253

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.R0657	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	150.8	6.6e-47	15	145	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk... 95 +ppGfrF+Ptdeelv +yLk kv + +l++ ++i+++++ +++PwdLp ++ e++e+yfFs+++ ky++g+r nr+t+sgyWkatg+dk+++s+ Araip.R0657 15 MPPGFRFQPTDEELVFQYLKCKVFSFPLPA-SMIPDINLSNYDPWDLPGNC-DEHQEMYFFSSKEPKYRNGSRMNRTTTSGYWKATGSDKRIISSsnn 110 79**************************.89***********655.45789********************************98666 PP NAM 96 ..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++ g++ktLvfy+g++p+g++t+Wv+heyrl Araip.R0657 111 sdDNSILGIRKTLVFYQGKSPNGTRTHWVLHEYRL 145 655556*************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	1.18E-53	12	170	IPR003441	NAC domain
PROSITE profile	PS51005	52.005	15	170	IPR003441	NAC domain
Pfam	PF02365	2.8E-24	16	145	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 211 aa Download sequence Send to blast
MEKLNFVKKN GVSRMPPGFR FQPTDEELVF QYLKCKVFSF PLPASMIPDI NLSNYDPWDL 60 PGNCDEHQEM YFFSSKEPKY RNGSRMNRTT TSGYWKATGS DKRIISSSNN SDDNSILGIR 120 KTLVFYQGKS PNGTRTHWVL HEYRLVSTTL HANNNACDIG DWVLCRLSVK KRSVGSGSII 180 ISKKARSSPS SSSSSSTSSN NVMEVSSSYA S

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-47	15	174	17	169	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-47	15	174	17	169	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-47	15	174	17	169	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-47	15	174	17	169	NO APICAL MERISTEM PROTEIN
3swm_A	9e-47	15	174	20	172	NAC domain-containing protein 19
3swm_B	9e-47	15	174	20	172	NAC domain-containing protein 19
3swm_C	9e-47	15	174	20	172	NAC domain-containing protein 19
3swm_D	9e-47	15	174	20	172	NAC domain-containing protein 19
3swp_A	9e-47	15	174	20	172	NAC domain-containing protein 19
3swp_B	9e-47	15	174	20	172	NAC domain-containing protein 19
3swp_C	9e-47	15	174	20	172	NAC domain-containing protein 19
3swp_D	9e-47	15	174	20	172	NAC domain-containing protein 19
4dul_A	7e-47	15	174	17	169	NAC domain-containing protein 19
4dul_B	7e-47	15	174	17	169	NAC domain-containing protein 19
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269\|PubMed:24243147}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.R0657

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016193506.1	1e-156	NAC domain-containing protein 41
Refseq	XP_025637475.1	1e-156	NAC domain-containing protein 41
Swissprot	O22798	3e-64	NAC41_ARATH; NAC domain-containing protein 41
TrEMBL	A0A444ZYC4	1e-155	A0A444ZYC4_ARAHY; Uncharacterized protein
STRING	GLYMA08G01280.1	4e-92	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF704	34	139

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G33480.2	3e-61	NAC domain containing protein 41

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]