PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.R0AG2
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 270aa    MW: 30063.7 Da    PI: 10.2925
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.R0AG2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF451.4e-141036228
                 ---SHHHHHHHHHHHHHHHHHHHHHHH CS
       SRF-TF  2 rienksnrqvtfskRrngilKKAeELS 28
                 ri+n++ rqvtfskRrng+lKKA+ELS
  Araip.R0AG2 10 RIDNSTSRQVTFSKRRNGLLKKAKELS 36
                 8*************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF554554.19E-14136IPR002100Transcription factor, MADS-box
PROSITE profilePS5006620.1136IPR002100Transcription factor, MADS-box
SMARTSM004322.0E-13147IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-14323IPR002100Transcription factor, MADS-box
PfamPF003195.0E-121036IPR002100Transcription factor, MADS-box
PRINTSPR004048.3E-142338IPR002100Transcription factor, MADS-box
SuperFamilySSF561127.14E-6146207IPR011009Protein kinase-like domain
PfamPF031098.5E-16163205IPR004147UbiB domain
SuperFamilySSF633806.24E-6202253IPR017938Riboflavin synthase-like beta-barrel
Gene3DG3DSA:2.40.30.103.7E-8202241No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0055114Biological Processoxidation-reduction process
GO:0003677Molecular FunctionDNA binding
GO:0016491Molecular Functionoxidoreductase activity
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    Send to blast
MGRGKIAIRR IDNSTSRQVT FSKRRNGLLK KAKELSGKER SSLLFPPPLP VAPRQRSLPP  60
LTTPQQLSGS APPFPTASSA TPSLPPTLRS IMNIHCMDCV RKELRGRWSS IKFTSGQQRN  120
FETCVLRTEY LVPQEYVITL RESMLNRCPV SSYEQICEVF KRELGDTLEN IFAEFDPIPI  180
ASASLAQVHV ARTHDGQKVA VKVPYREGQS IRVILDGIDK NGKPHKLGLY SIASSALGDL  240
ALPYPAELGC FRHDLVTGIP TWHQRPQSPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1bx0_A6e-1318924159106PROTEIN (FERREDOXIN:NADP+ OXIDOREDUCTASE)
1bx1_A6e-1318924159106PROTEIN (FERREDOXIN:NADP+ OXIDOREDUCTASE)
1fnb_A6e-1318924159106FERREDOXIN-NADP+ REDUCTASE
1fnc_A6e-1318924159106FERREDOXIN-NADP+ REDUCTASE
1fnd_A6e-1318924159106FERREDOXIN-NADP+ REDUCTASE
1frq_A6e-1318924159106PROTEIN (FERREDOXIN:NADP+ OXIDOREDUCTASE)
1gaq_A6e-1320224167106FERREDOXIN-NADP+ REDUCTASE
1gaq_C6e-1320224167106FERREDOXIN-NADP+ REDUCTASE
1gaw_A6e-1320224167106FERREDOXIN-NADP+ REDUCTASE
1gaw_B6e-1320224167106FERREDOXIN-NADP+ REDUCTASE
3w5u_A6e-1320224167106Ferredoxin
3w5u_C6e-1320224167106Ferredoxin
3w5u_E6e-1320224167106Ferredoxin
3w5u_G6e-1320224167106Ferredoxin
3w5v_A6e-1320224167106Ferredoxin
3w5v_C6e-1320224167106Ferredoxin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.R0AG2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC1380109e-34AC138010.13 Medicago truncatula clone mth2-21i21, complete sequence.
GenBankAC1470139e-34AC147013.4 Medicago truncatula clone mth2-159f24, complete sequence.
GenBankBT0516989e-34BT051698.1 Medicago truncatula clone MTYF5_F6_F7_F81G-F-2 unknown mRNA.
GenBankBT1391709e-34BT139170.1 Medicago truncatula clone JCVI-FLMt-16D16 unknown mRNA.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A0B2RNR38e-42A0A0B2RNR3_GLYSO; Putative ABC1 protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57230.24e-16AGAMOUS-like 16