PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.R1ISD
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 471aa    MW: 54476.8 Da    PI: 8.9301
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.R1ISDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR148.23.5e-1573159189
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                  +fY +Y ++vGF+  +++++  k+ ++ +++  +C++ g+r++++     ++r+++++ ++Cka++ vk ++   kw+++k+el H+H +
  Araip.R1ISD  73 QFYYNYVNKVGFEPHIRNTNFDKNGRTPINQSIQCNRDGYRTKKNPV---TQRSNTVSSVHCKARIYVKFDTeLRKWRLSKVELAHTHRC 159
                  6****************************************998766...8899999*************99899*************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.3E-1273160IPR004330FAR1 DNA binding domain
PROSITE profilePS509669264300IPR007527Zinc finger, SWIM-type
SMARTSM005751.3E-4275302IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MAFVIDLKTQ SSSEEIHSFD THIDMDNINS CDSSSNSAIE TECTTEVLIH PTISDEEIPK  60
VGMLFGTLEE ARQFYYNYVN KVGFEPHIRN TNFDKNGRTP INQSIQCNRD GYRTKKNPVT  120
QRSNTVSSVH CKARIYVKFD TELRKWRLSK VELAHTHRCD PSLSWMFKKN RELSMHVKDV  180
IERNDQELEC DAVDNRGLIP CVSNSPIEKQ FQHVYTNCIF RDVQTKFIKK CDCNLSSRVV  240
KDNQYFYEVT QQKIIKGMSV YSKYEVVFCP ISHQVRCNCF RFESYGILCC HVLSVLSHCR  300
VDKVNSSYIL SQWSKNVYRK HTQIRSSHES QRSDESMNIF RGLCVDFYNV AQDFVHDKEE  360
ADILRSAFVS AKVALSEHRA KHSKSVRTSE CPDGLNALRS PPHVVPRGRP SFKRLEADLD  420
RKIKNGTKKR RASSKHTKEV AAVEGDKHLN KATERRITAS KHPKLYFSVY C
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.R1ISD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025627845.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A444XWU10.0A0A444XWU1_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2351723
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76320.13e-09FAR1-related sequence 4