PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.R1XQM
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family TALE
Protein Properties Length: 133aa    MW: 15928.1 Da    PI: 9.0856
Description TALE family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.R1XQMgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox28.13.4e-09761092255
                  SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHH CS
     Homeobox  22 nrypsaeereeLAkklgLterqVkvWFqNrRake 55 
                   +yp+++++  L+k++gL+++q+ +WF N+R ++
  Araip.R1XQM  76 WPYPTHADKVALTKWTGLDTKQINNWFINQRKRH 109
                  59****************************9885 PP
2ELK27.95.4e-102950122
          ELK  1 ELKhqLlrKYsgyLgsLkqEFs 22
                 ELK+ Llr  sgy+ +Lk+EFs
  Araip.R1XQM 29 ELKDDLLRRHSGYITNLKHEFS 50
                 9********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512139.3412949IPR005539ELK domain
SMARTSM011887.7E-62950IPR005539ELK domain
PfamPF037892.1E-82950IPR005539ELK domain
PROSITE profilePS5007111.30549112IPR001356Homeobox domain
SuperFamilySSF466891.5E-1851121IPR009057Homeodomain-like
SMARTSM003892.9E-1051116IPR001356Homeobox domain
CDDcd000862.77E-1153112No hitNo description
Gene3DG3DSA:1.10.10.601.4E-2354114IPR009057Homeodomain-like
PfamPF059205.1E-1569108IPR008422Homeobox KN domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 133 aa     Download sequence    Send to blast
NEVITGSSEK CLHKENYDEK ETNIINHQEL KDDLLRRHSG YITNLKHEFS KNKKKERLPN  60
EAKQILLAWW DIHFKWPYPT HADKVALTKW TGLDTKQINN WFINQRKRHW KQTEKMETTV  120
ILDGIYGPIC ITD
Functional Description ? help Back to Top
Source Description
UniProtMay play a role in meristem formation and/or maintenance. Overexpression causes the hooded phenotype characterized by the appearance of an extra flower of inverse polarity on the lemma. Binds to the DNA sequence 5'-TGAC-3'.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.R1XQM
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_019416427.12e-53PREDICTED: homeobox protein knotted-1-like 2
SwissprotQ434843e-34KNOX3_HORVU; Homeobox protein KNOX3
TrEMBLA0A4P1QXB84e-52A0A4P1QXB8_LUPAN; Uncharacterized protein
STRINGGLYMA04G35850.23e-45(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF62034125
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G23380.12e-36KNOTTED1-like homeobox gene 6
Publications ? help Back to Top
  1. Müller KJ, et al.
    The barley Hooded mutation caused by a duplication in a homeobox gene intron.
    Nature, 1995. 374(6524): p. 727-30
    [PMID:7715728]
  2. Krusell L,Rasmussen I,Gausing K
    DNA binding sites recognised in vitro by a knotted class 1 homeodomain protein encoded by the hooded gene, k, in barley (Hordeum vulgare).
    FEBS Lett., 1997. 408(1): p. 25-9
    [PMID:9180261]