PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.R41VS
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 461aa    MW: 52716.7 Da    PI: 9.3609
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.R41VSgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1492e-1540126191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++k+   +ei+++  +Cs+egk +++ +    +++t++    +C  ++ ++  k  g w ++k++l+ +H+++p
  Araip.R41VS  40 KFYKDYAKAAGFSTRVQSTNKK--GNEIKNQLITCSREGKWKSKISP---TENTNPRAGLNCPTRIYIHTLKdVGAWIISKIVLHYSHPCCP 126
                  6****************98887..8889*************998877...899999************998879**************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031011.1E-1240126IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.963269305IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-4279302IPR007527Zinc finger, SWIM-type
SMARTSM005752.4E-4280307IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 461 aa     Download sequence    Send to blast
MKFLRRSGVD QNFFGSLSVV DDQLVPKVGM TFKTLEDTAK FYKDYAKAAG FSTRVQSTNK  60
KGNEIKNQLI TCSREGKWKS KISPTENTNP RAGLNCPTRI YIHTLKDVGA WIISKIVLHY  120
SHPCCPTQAE MLKQHRELSM FVRRTIENNE EAGMKSTQRS ESMHSFFNKF ITQNSSLIQF  180
VKQYDNYLES REQAERESDA ADFHTVIPCA TKSSIEAQFQ DVYTHQNFRE VQAQFRGKAN  240
CITRLTNSAL GYSVYEVGEQ FFSSIFNKFV ITYNSVAAEV KCQCLLFESR GILCRHALSV  300
LSFERVSQVS SRYILERWRK KSSHDEPLLE PKSKRFNELV FRSQNICEFA LESEELTAIM  360
HRAYDNVMVE MEALKAKRKG TSSLSHEDAN LESVNELQSP PRIANGSKKK KTKALNELNV  420
FDAASVVRPN SSQYQGRVMN YQFRQPAAGD NFWNLGSNST L
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.R41VS
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020986710.11e-178protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBLA0A445B3W80.0A0A445B3W8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.25e-30far-red elongated hypocotyls 3