PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.R5E6U
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 455aa    MW: 50865.4 Da    PI: 7.0378
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.R5E6UgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR159.41.1e-1890177390
         FAR1   3 YneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 
                  Y+++A+  GF vrk    +   +g  ++r+f C +eg+r+ ++ +  ++ r+++ e+rtgC+aklk+ ++  d++w+v +++  HnH la
  Araip.R5E6U  90 YKQFARLRGFGVRKGDVARV--DGVLVQREFFCHREGTRHAKHYDrPDRVREEKLESRTGCTAKLKIYLDAqDQVWKVRRIDDSHNHLLA 177
                  9**************99998..*****************9999885677788999**************999***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.7E-1690177IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 455 aa     Download sequence    Send to blast
MDSTPPFSCG DDDTDWLSEE DFSGVASFSG KDEEPSFETD SEGGDTTEEV HGNGFGVDPV  60
PSDGDAPGFR STEDFVDQVF KTEEEAYAAY KQFARLRGFG VRKGDVARVD GVLVQREFFC  120
HREGTRHAKH YDRPDRVREE KLESRTGCTA KLKIYLDAQD QVWKVRRIDD SHNHLLAASM  180
FNHLLPSHRS LSKSDKAQVD SLKKFGLDKI ELFASKIYTR SVFKEVRKQI KGVGGLLFLE  240
KDTISTISVY KFSSTANRRS VRRVLYDPTE PKIECDCHMW SSEDAKEWTP KETEREEAHG  300
SRLLRYDTLS SAMSAVAKLA SEDAGKFTVA RNVIASLAHK LHGQTGNTVD HHAAVTHKEV  360
VKEPSVARTK GAPKHGRETA SLAQDEPGGK RRCCSSCGQP SHTKRTCSSK REVSHNGVRE  420
GMSLTREDSS SGDPRGNRER HDRSEVXXXX XXXXV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.R5E6U
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016199629.11e-152protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444Z4Q01e-151A0A444Z4Q0_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1719126
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.16e-15FAR1-related sequence 10