PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.R5TUD
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 235aa    MW: 26891.7 Da    PI: 7.5812
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.R5TUDgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR141.83.5e-13111192189
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                  ++YneY++  GFsvr+ k  +++++g          + gk+ ++ ++   +  +r+ tr gC+a++kv+ ++ + +w v+++  +HnH++
  Araip.R5TUD 111 DYYNEYSRIKGFSVRRLKVGRRTKQG-----GGEGERDGKHMQRGER---KMDPRPITRRGCEARIKVHVNDtNRRWFVEQFCDNHNHPM 192
                  69**************9998885555.....4455677777776555...899******************99***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.5E-10111193IPR004330FAR1 DNA binding domain
PROSITE profilePS508118.513138193IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 235 aa     Download sequence    Send to blast
MLDNADLYSV RYLNCDRRMD LWSEATIFVD VAHRLLSPMP YVAAGDEMSG ETVSVEEAEA  60
MDLSAVDTDI DVEALVRIVD GIGLFGVIEF SALTAKDILT TEFINLQAAY DYYNEYSRIK  120
GFSVRRLKVG RRTKQGGGEG ERDGKHMQRG ERKMDPRPIT RRGCEARIKV HVNDTNRRWF  180
VEQFCDNHNH PMLDVRFRGL MRSHRAVKEG DLHKINSMRK AGLRVLTIFC AFANQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.R5TUD
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016172821.11e-102protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_016192260.11e-98protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_025639519.11e-98protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444XFS63e-97A0A444XFS6_ARAHY; Uncharacterized protein
TrEMBLA0A445A1583e-97A0A445A158_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.11e-10FAR1-related sequence 5