PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.R6LDD

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 517aa MW: 58554.2 Da PI: 9.0683

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.R6LDD	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	59	1.6e-18	58	144	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk +GFs+r+++++++ +ei+++ +Cs+egk +++ + +++t+++ +C a++ ++ k g w ++k++l+H+H+++p Araip.R6LDD 58 KFYKNYAKAAGFSTRVRSTNRN--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 144 6**************98887..8889*********998877...8999**********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	9.9E-16	58	144	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.174	319	355	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-4	321	352	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-4	330	357	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MDDSSSDCQL NQGEVDYEFE SNEVPELSCC GSGPLSVVDD QFVPKVGMTF TTLEDAGKFY 60 KNYAKAAGFS TRVRSTNRNG NEIKNQLITC SREGKWKSKI SPTEKTNPTA GLNCPARIYI 120 HTLKDVGAWI ISKVVLDHSH PCCPSKAEML KQHKELSMSI RRTIENNEEA GIRPSKTYQS 180 FVAAAGDRHI WIPIYLDHHF WAGMRSTQRS ESMHSFFNKF ITRNSSLIQF VKQYDNCLGS 240 REQAERESDA ADFHTVIPCA TKSSIEAQFQ DVYTHQKFRE VQVQFRGKAN CITRLTNSAL 300 GYSVYEVGEQ VSSSIFNKFV VTYDSVAAEV KCQCLLFESR GILCRHALSV LSFERVSQVS 360 PRYILERWSK KVKRRYTHIK SSHDEPLLEP RSKRFDQLEL TAILHRAYDN VMAEMESLKT 420 KRKGTSSLSH EDANLESVNE LQSPPRIQTR GRPKNRLGSK LDKQIANATK KKKTKVLSEI 480 NLFDAASVVH SNSSQYQGHV MNYQFRIPGA GDNSLAV

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MDDSSSDCQL NQGEVDYEFE SNEVPELSCC GSGPLSVVDD QFVPKVGMTF TTLEDAGKFY  60
KNYAKAAGFS TRVRSTNRNG NEIKNQLITC SREGKWKSKI SPTEKTNPTA GLNCPARIYI  120
HTLKDVGAWI ISKVVLDHSH PCCPSKAEML KQHKELSMSI RRTIENNEEA GIRPSKTYQS  180
FVAAAGDRHI WIPIYLDHHF WAGMRSTQRS ESMHSFFNKF ITRNSSLIQF VKQYDNCLGS  240
REQAERESDA ADFHTVIPCA TKSSIEAQFQ DVYTHQKFRE VQVQFRGKAN CITRLTNSAL  300
GYSVYEVGEQ VSSSIFNKFV VTYDSVAAEV KCQCLLFESR GILCRHALSV LSFERVSQVS  360
PRYILERWSK KVKRRYTHIK SSHDEPLLEP RSKRFDQLEL TAILHRAYDN VMAEMESLKT  420
KRKGTSSLSH EDANLESVNE LQSPPRIQTR GRPKNRLGSK LDKQIANATK KKKTKVLSEI  480
NLFDAASVVH SNSSQYQGHV MNYQFRIPGA GDNSLAV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.R6LDD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445AF03	0.0	A0A445AF03_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-31	far-red elongated hypocotyls 3