PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.R7HA9
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 302aa    MW: 34631.8 Da    PI: 9.9107
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.R7HA9genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B372.17.1e-2322111197
                  EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
           B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                  ffk+l+p   l  + +++p+kf++e+g  ++ s +++l+ ++g +Wev+l  +k++gr++l++GWkeFv+ + L+ gD +vF++dg+s f  +v ++
  Araip.R7HA9  22 FFKILLPRTILDGK-IMIPRKFVREYG--ERLSNKVVLKLPNGTKWEVYL--EKHDGRIWLQNGWKEFVEHHSLRFGDLLVFRFDGTSHF--NVFIC 111
                  88999888888776.9**********9..45999****************..*********************************99999..66666 PP
2B344.72.3e-14205297599
                  -..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS.SEE..EEEEE-S CS
           B3   5 ltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr.sefelvvkvfrk 99 
                  +++++ +   r++lp  f++++ ++  +++t+tl     rs +v+liy +k ++  lt+GW +F+++ +L+ gD + F+l  ++ ++  ++v++f++
  Araip.R7HA9 205 MIKPNRGL-YRMWLPMGFLKDYIKP--GKQTVTLLV-GERSSKVRLIYYQKHSTSCLTAGWTRFARESDLEIGDACSFELLaSDcEDIVMKVSIFKH 297
                  55555544.47********999433..445777766.56777888877555555679**********************764777777788888776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.5E-2716114IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.94E-2717113IPR015300DNA-binding pseudobarrel domain
CDDcd100179.05E-2321112No hitNo description
PROSITE profilePS5086315.76321114IPR003340B3 DNA binding domain
PfamPF023621.3E-1922111IPR003340B3 DNA binding domain
SMARTSM010196.5E-2322114IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-17198298IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.53E-15198297IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508639.53200298IPR003340B3 DNA binding domain
SMARTSM010192.5E-7201298IPR003340B3 DNA binding domain
CDDcd100171.70E-13202296No hitNo description
PfamPF023625.4E-13203297IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 302 aa     Download sequence    Send to blast
MASKLYKDAS NGDEATTKPV HFFKILLPRT ILDGKIMIPR KFVREYGERL SNKVVLKLPN  60
GTKWEVYLEK HDGRIWLQNG WKEFVEHHSL RFGDLLVFRF DGTSHFNVFI CDMSATEIDY  120
PFKNKYGKRA NTSDEELLPR KTKRTNANNK DGGTSNIQDN TISICKLKNP REGKMSNDLL  180
SKTKPSGFGK FETTEVAKNT SFTVMIKPNR GLYRMWLPMG FLKDYIKPGK QTVTLLVGER  240
SSKVRLIYYQ KHSTSCLTAG WTRFARESDL EIGDACSFEL LASDCEDIVM KVSIFKHSTT  300
EP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.R7HA9
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020961332.10.0B3 domain-containing transcription factor VRN1-like
RefseqXP_025662020.10.0B3 domain-containing transcription factor VRN1-like
TrEMBLA0A444YTG60.0A0A444YTG6_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF9834369
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-35B3 family protein