PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.R86Y3
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family B3
Protein Properties Length: 176aa    MW: 20850 Da    PI: 7.2551
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.R86Y3genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3352.5e-11988287
                 EEE-..-HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
           B3  2 fkvltpsdvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87
                 fkvl    ++ ++ l +pk f++e+  g++ +   ++l+ +++ + +v   ++k+ ++++l++GW++ v++ gLk   f++F ++gr
  Araip.R86Y3  9 FKVL--VLNF-QHELKIPKAFVKEYwRGVS-N--PIVLKLPNNLEQRVHW-IQKNEDEVWLEQGWEQVVEDFGLKHSQFLTFDYKGR 88
                 5555..3334.4569**********95562.3..4999999999999999.5899999*************************9886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.71E-11788IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.109.5E-11788IPR015300DNA-binding pseudobarrel domain
PfamPF023626.8E-9888IPR003340B3 DNA binding domain
SMARTSM010190.0015896IPR003340B3 DNA binding domain
CDDcd100174.51E-8888No hitNo description
PfamPF035529.5E-1090126IPR005150Cellulose synthase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030244Biological Processcellulose biosynthetic process
GO:0016020Cellular Componentmembrane
GO:0003677Molecular FunctionDNA binding
GO:0016760Molecular Functioncellulose synthase (UDP-forming) activity
Sequence ? help Back to Top
Protein Sequence    Length: 176 aa     Download sequence    Send to blast
MPLHERGFFK VLVLNFQHEL KIPKAFVKEY WRGVSNPIVL KLPNNLEQRV HWIQKNEDEV  60
WLEQGWEQVV EDFGLKHSQF LTFDYKGRYV AGFSDALNGG NESWGPLFGK VFFAFWVIFY  120
LYPIIHSSKV SWVARTEHQP LLYFVKISEQ YYSSKENIFE SHMITSKSLQ LLDITV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.R86Y3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_025663521.14e-56putative B3 domain-containing protein Os03g0621600 isoform X1
TrEMBLA0A444YGP31e-54A0A444YGP3_ARAHY; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49475.11e-06B3 family protein