PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.R8VZC
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 135aa    MW: 15177.2 Da    PI: 9.5047
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.R8VZCgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR130.21.5e-0959119148
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk...............t 48 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++  +                
  Araip.R8VZC  59 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKIANpalklsfkmrtltqsL 119
                  6***************998776..8889************99998886666666666655542 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.3E-759118IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 135 aa     Download sequence    Send to blast
KFDLVLKIMD HSTSDSQLNA GEVDYESESN EVPEPLSVVD DELVPKVGMT FTTVEDAGKF  60
YRNYAKAAGF STRVRCTNRK GNEIKNQLIT CSREGKWKSK IANPALKLSF KMRTLTQSLG  120
KSKRNSEERR IASPD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.R8VZC
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371782e-66HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020992539.17e-63protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444Y6833e-61A0A444Y683_ARAHY; Uncharacterized protein
TrEMBLA0A444YCF02e-61A0A444YCF0_ARAHY; Uncharacterized protein
TrEMBLA0A445C8R32e-60A0A445C8R3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G28530.15e-07FAR1-related sequence 10