PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.R9J0M
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB_related
Protein Properties Length: 306aa    MW: 34628.8 Da    PI: 5.9531
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.R9J0MgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding31.83.4e-10179222347
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rWT++E+ l+v++ +  G++ W++I+++  k++   q+ s+ qky
      Araip.R9J0M 179 RWTEDEHRLFVRGYQAEGTN-WSRISKYYVKTKIYHQITSHAQKY 222
                      9*****************99.***********************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.7E-43684IPR009057Homeodomain-like
SMARTSM007170.0313685IPR001005SANT/Myb domain
SuperFamilySSF466896.36E-53790IPR009057Homeodomain-like
CDDcd001672.03E-44083No hitNo description
Gene3DG3DSA:1.10.10.608.2E-6172223IPR009057Homeodomain-like
PROSITE profilePS5129414.766172227IPR017930Myb domain
SuperFamilySSF466899.72E-12174227IPR009057Homeodomain-like
TIGRFAMsTIGR015571.0E-10175226IPR006447Myb domain, plants
SMARTSM007170.0013176225IPR001005SANT/Myb domain
PfamPF002493.4E-7179222IPR001005SANT/Myb domain
CDDcd001670.0031179223No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 306 aa     Download sequence    Send to blast
MDPLDMIDPW DMIDLDADRR NMVEQCAIDL QLQPTQPQVW TWEENKAFES VIANCFQYAQ  60
HNIAARFPGK TPAQLQERFK KLMKDINVIH NGYTANTPLN AAASENMTMT MAAPTTTLEH  120
NPVSISIINA TTTTPPPPPY NTYHHHHRAE VVAAAAPMEA ATREQNQSAN TNNTKKYSRW  180
TEDEHRLFVR GYQAEGTNWS RISKYYVKTK IYHQITSHAQ KYFIHKKGLA RGEKLRESIY  240
DELYPNPKNN EVGIQDLSVY RNILDIILSG LDGNAEGDGE LVSIQSLDGY AEGALDEGCI  300
FSKSLV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.R9J0M
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020966015.11e-155uncharacterized protein LOC107619716 isoform X1
TrEMBLA0A444XRN41e-152A0A444XRN4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1908424
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.11e-13MYB_related family protein