PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RAG9J
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 289aa    MW: 32933.1 Da    PI: 4.9937
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RAG9JgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.61.1e-13102152154
                  CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
          HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                  +r++h ++Er+RR+++N+ ++ Lr l+P +   + ++ + a+i   A++Y+k L
  Araip.RAG9J 102 QRMTHIAVERNRRKQMNDYLSLLRNLMPDS---YVQRGDQASIIGGAINYVKVL 152
                  79****************************...9*****************977 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.26E-12100157No hitNo description
SuperFamilySSF474597.46E-17101166IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.097101152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000107.1E-11102152IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-13102164IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-9107158IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MCLPESERDM ALEAVLYTNN IQQPLPSSYA INDTNKDLDF FNFNNEEDQH QFIDTGLHYL  60
LSPPPPPPEE TETTMDTTST CSERPKRRRG KTRKNKEEIE NQRMTHIAVE RNRRKQMNDY  120
LSLLRNLMPD SYVQRGDQAS IIGGAINYVK VLEQKLQFLA AHKEITTTTT DEDEGSDLTN  180
NKTGTMPFSE FFGFPQVTGN ADIEVTMVES HANLKIRSKK KPKQLLKMVS NLQAMRLTIL  240
HLNVTTTNND IVLYSLSVKV EDDCKLGSVD EIATAVCQMM ENIQHESVE
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1102113RMTHIAVERNRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.RAG9J
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016205493.10.0transcription factor bHLH96
RefseqXP_025662552.10.0transcription factor bHLH96
SwissprotQ9C7T41e-74BH096_ARATH; Transcription factor bHLH96
TrEMBLA0A444YK520.0A0A444YK52_ARAHY; Uncharacterized protein
STRINGGLYMA19G42520.11e-107(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF71834135
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72210.18e-75bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]