PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.RBS2M

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 516aa MW: 58944.8 Da PI: 9.1127

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.RBS2M	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	40.3	1e-12	65	151	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk + Fs+r+++++k+ +ei+++ +Cs+e k +++ + +++t+++ + +a++ ++ k ++w ++k++l H+H+++p Araip.RBS2M 65 KFYKDYAKAANFSTRVRSTNKK--GNEIKNQLITCSREEKWKSKISP---TEKTNPTAGLNYRARIYIHTLKdVATWIISKVVLYHSHPCCP 151 6**************98887..8889*******99998776...899999********998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.4E-9	65	151	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.174	294	330	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.3E-4	296	327	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	2.4E-4	305	332	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 516 aa Download sequence Send to blast
MDDSTSDCQL NQGKVDFEFE SNEVPELTYC HNRCRSGVLG PLSVVDEQLI PKVGMTFKTL 60 EDATKFYKDY AKAANFSTRV RSTNKKGNEI KNQLITCSRE EKWKSKISPT EKTNPTAGLN 120 YRARIYIHTL KDVATWIISK VVLYHSHPCC PTQAEMLKQH RELSMSVRCT IENNEEAGMK 180 STQRSKSMHS FFNKFITRNS SLIQFVKQYD NCLGSREQAE RESDAADFHT VISCATKSSI 240 EAQFQNVYTH QKFREVQAQV RGKANCITRL TNSALGYSVY EVGEQVSSSI FNKFVVTYDS 300 VAAEVKCQCL LFESRGILCR HALSVLSFER VSQVSSRYIL ERWSKKSSHD EPLLEPRSKR 360 FDELAFRSQN ICEFASELEE LTAILHRAYD NVMVEMESMK AKRKGTSSLS HEDANLESVN 420 ELQSPPRIRT RGRPKNRLGS KLDKQIANAS KKKKTKALNE LNLFDATLVV RSNSSQYQGH 480 VMNYQFRKPA AADNFLACVQ FVTRLPNSYI TQCQYH

Sequence ? help Back to Top

Protein Sequence Length: 516 aa Download sequence Send to blast

MDDSTSDCQL NQGKVDFEFE SNEVPELTYC HNRCRSGVLG PLSVVDEQLI PKVGMTFKTL  60
EDATKFYKDY AKAANFSTRV RSTNKKGNEI KNQLITCSRE EKWKSKISPT EKTNPTAGLN  120
YRARIYIHTL KDVATWIISK VVLYHSHPCC PTQAEMLKQH RELSMSVRCT IENNEEAGMK  180
STQRSKSMHS FFNKFITRNS SLIQFVKQYD NCLGSREQAE RESDAADFHT VISCATKSSI  240
EAQFQNVYTH QKFREVQAQV RGKANCITRL TNSALGYSVY EVGEQVSSSI FNKFVVTYDS  300
VAAEVKCQCL LFESRGILCR HALSVLSFER VSQVSSRYIL ERWSKKSSHD EPLLEPRSKR  360
FDELAFRSQN ICEFASELEE LTAILHRAYD NVMVEMESMK AKRKGTSSLS HEDANLESVN  420
ELQSPPRIRT RGRPKNRLGS KLDKQIANAS KKKKTKALNE LNLFDATLVV RSNSSQYQGH  480
VMNYQFRKPA AADNFLACVQ FVTRLPNSYI TQCQYH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.RBS2M

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445A850	0.0	A0A445A850_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	6e-29	far-red elongated hypocotyls 3