PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.RC7DZ

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 544aa MW: 62749.4 Da PI: 8.6943

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.RC7DZ	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	34.5	6.8e-11	83	164	1	89
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 kfY +YAk+vGF +++++++ ++r + ++ + ++e + + + r++ t + C+ ++ v +++ ++ w ++lel H+H++ Araip.RC7DZ 83 KFYANYAKKVGFVTKTRNTNLTRRRR-NQRYPLISYRESRVKA-------ATRENRITAMRCRVRMYVMLDReKESWIAARLELRHSHPC 164 6**********9999888875555.4455555554444333.......4477999*********9999************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-7	83	165	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.792	360	396	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	8.7E-4	371	398	IPR006564	Zinc finger, PMZ-type
Pfam	PF04434	0.001	372	394	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 544 aa Download sequence Send to blast
MEFSTPEGGS NSTLINSNEG NEKLSVGEVV IQEESKVDEI TDDIVMRKDE LDLRHKLPDH 60 SGISEEEISF LGMCFDSLPL AQKFYANYAK KVGFVTKTRN TNLTRRRRNQ RYPLISYRES 120 RVKAATRENR ITAMRCRVRM YVMLDREKES WIAARLELRH SHPCSAEKAV HYLEYRELTM 180 HAKCVITDND EAGIRPNKTY LSLANEFFES GLHVVSNRHS YALFFYVDLY ANRRKWVPIF 240 FKSESWAGIR STQRSESMHA FYGGFLHCKS GLVQFVHEYD NKELENDAVD SKGVIPCIGS 300 TGIERKFQRE YTSNMFRDVQ LEVRKKIDCV VRSTEPQGDL IFIKVDEHKI ICEKTVYRTF 360 TVDFDPLSQE VRCDCNKFES IGILCCHTLA VFHTTEFTEY RAAMFFLNGN IMRKHTYIKS 420 SHDVAQTDES HNLFMRFCSE FYNVAQEFVT CDEEASILRS ALWDAKSKLT DYRASMRSTT 480 VAATQNIMPT QSTGGVVVHD IQGPSRVKTK GRPKSKRLGA ELDKSIKKST QKRKRKSHPV 540 VTLS

Sequence ? help Back to Top

Protein Sequence Length: 544 aa Download sequence Send to blast

MEFSTPEGGS NSTLINSNEG NEKLSVGEVV IQEESKVDEI TDDIVMRKDE LDLRHKLPDH  60
SGISEEEISF LGMCFDSLPL AQKFYANYAK KVGFVTKTRN TNLTRRRRNQ RYPLISYRES  120
RVKAATRENR ITAMRCRVRM YVMLDREKES WIAARLELRH SHPCSAEKAV HYLEYRELTM  180
HAKCVITDND EAGIRPNKTY LSLANEFFES GLHVVSNRHS YALFFYVDLY ANRRKWVPIF  240
FKSESWAGIR STQRSESMHA FYGGFLHCKS GLVQFVHEYD NKELENDAVD SKGVIPCIGS  300
TGIERKFQRE YTSNMFRDVQ LEVRKKIDCV VRSTEPQGDL IFIKVDEHKI ICEKTVYRTF  360
TVDFDPLSQE VRCDCNKFES IGILCCHTLA VFHTTEFTEY RAAMFFLNGN IMRKHTYIKS  420
SHDVAQTDES HNLFMRFCSE FYNVAQEFVT CDEEASILRS ALWDAKSKLT DYRASMRSTT  480
VAATQNIMPT QSTGGVVVHD IQGPSRVKTK GRPKSKRLGA ELDKSIKKST QKRKRKSHPV  540
VTLS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	533	537	KRKSH

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.RC7DZ

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_025625396.1	1e-167	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445DIZ8	0.0	A0A445DIZ8_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13637	2	7

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G38180.1	4e-17	FAR1-related sequence 5