PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RD4BX
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family SBP
Protein Properties Length: 346aa    MW: 38851.5 Da    PI: 7.9164
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RD4BXgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP131.33.3e-4174150278
                  -SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
          SBP   2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                  C v+gC++dls+++eyhrrh+vCe+hsk+pvvlv g++qrfCqqCsrfh+l efDe krsCr+rL++hn+rrrk+q+
  Araip.RD4BX  74 CLVDGCSSDLSDCREYHRRHRVCEKHSKTPVVLVGGKQQRFCQQCSRFHSLGEFDEVKRSCRKRLDGHNRRRRKPQP 150
                  **************************************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1100.104.7E-3367135IPR004333Transcription factor, SBP-box
PROSITE profilePS5114131.74471148IPR004333Transcription factor, SBP-box
SuperFamilySSF1036122.62E-3873153IPR004333Transcription factor, SBP-box
PfamPF031101.0E-3074147IPR004333Transcription factor, SBP-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MDWDWKEFAW DASELDLSHK NSNSEEASSV DLRLAGEASD LEKKEEESSI RTVSSSSSSA  60
KRSRLQNGPQ NLSCLVDGCS SDLSDCREYH RRHRVCEKHS KTPVVLVGGK QQRFCQQCSR  120
FHSLGEFDEV KRSCRKRLDG HNRRRRKPQP PSFLMSSEKF MYNYKGPRIL HFGNPQPYAN  180
PIVRNMWPAA SISGAKSEYD HHRFLYRIDK HRQDKELLLW QDNVPKSFNE STAMPGTPIH  240
QPICGSTIAP STTAKLGLKK PPPSDGKPGC FDAGCALYLL STIQTQTQSP SSGTEQFDAA  300
VDKPGSHQVL VLDANTTNLH CNGMLQMGHD GLVENGDSLA LPFFWE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ul4_A5e-27741471184squamosa promoter binding protein-like 4
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1130147KRSCRKRLDGHNRRRRKP
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.RD4BX
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF3122340.0KF312234.1 Arachis hypogaea squamosa promoter-binding-like protein (SPL16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016162224.10.0squamosa promoter-binding-like protein 18
RefseqXP_025658755.10.0squamosa promoter-binding-like protein 18
TrEMBLA0A444YSL90.0A0A444YSL9_ARAHY; Uncharacterized protein
STRINGGLYMA19G26390.11e-159(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF100312640
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.11e-42SBP family protein