PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RG64D
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MIKC_MADS
Protein Properties Length: 207aa    MW: 23587.9 Da    PI: 10.0163
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RG64DgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF787e-25959151
                 S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
       SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                 k+i+n s rqvtfskRr+g++KKA+EL +LCdae+a+i+fs+t kl+ y++
  Araip.RG64D  9 KKIDNISSRQVTFSKRRKGLFKKAQELNTLCDAEIALIVFSTTSKLFQYAT 59
                 68***********************************************86 PP
2K-box51.64.2e-18931701996
        K-box  19 qelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrk 96 
                   +++ L+k+ e+  re+R+l GedL+ L+l+eL++Le+qL k+l++  + K+el++++i +l++k   l een++L++
  Araip.RG64D  93 SNYDMLRKKEEQKARELRQLNGEDLQGLTLNELNKLEEQLIKGLSNASKVKDELFTQEIYTLKRKGAVLTEENHKLKQ 170
                  57889999999999**************************************************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006628.749161IPR002100Transcription factor, MADS-box
SMARTSM004321.8E-34160IPR002100Transcription factor, MADS-box
SuperFamilySSF554551.14E-29282IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-25323IPR002100Transcription factor, MADS-box
CDDcd002652.32E-35373No hitNo description
PfamPF003197.7E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-252338IPR002100Transcription factor, MADS-box
PRINTSPR004041.7E-253859IPR002100Transcription factor, MADS-box
PROSITE profilePS5129711.69188181IPR002487Transcription factor, K-box
PfamPF014864.7E-1593170IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 207 aa     Download sequence    Send to blast
MTRKKIEIKK IDNISSRQVT FSKRRKGLFK KAQELNTLCD AEIALIVFST TSKLFQYATS  60
SMQQLIERRN QHSPIQKSDP PSAVLQVESG AASNYDMLRK KEEQKARELR QLNGEDLQGL  120
TLNELNKLEE QLIKGLSNAS KVKDELFTQE IYTLKRKGAV LTEENHKLKQ ISSSIANEQR  180
SSFKSIVCNS SYLPEEDHGR DTNLKLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6bz1_A8e-21186186MEF2 CHIMERA
6bz1_B8e-21186186MEF2 CHIMERA
6bz1_C8e-21186186MEF2 CHIMERA
6bz1_D8e-21186186MEF2 CHIMERA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor that coordinates gene expression underlying the differentiation of the pedicel abscission zone. May also be involved in the maintenance of the inflorescence meristem state.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.RG64D
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016189876.11e-149MADS-box protein JOINTLESS isoform X2
RefseqXP_025638083.11e-149MADS-box protein JOINTLESS
SwissprotQ9FUY65e-52JOIN_SOLLC; MADS-box protein JOINTLESS
TrEMBLA0A444ZX291e-100A0A444ZX29_ARAHY; Uncharacterized protein
TrEMBLA0A444ZX621e-100A0A444ZX62_ARAHY; Uncharacterized protein
STRINGGLYMA08G07260.36e-81(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF89033106
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24540.16e-54AGAMOUS-like 24
Publications ? help Back to Top
  1. Nakano T,Kato H,Shima Y,Ito Y
    Apple SVP Family MADS-Box Proteins and the Tomato Pedicel Abscission Zone Regulator JOINTLESS have Similar Molecular Activities.
    Plant Cell Physiol., 2015. 56(6): p. 1097-106
    [PMID:25746985]