PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RK9DU
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 443aa    MW: 51186 Da    PI: 8.1725
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RK9DUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.16e-1851137191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r+++++++   ++i+++  +Cs+egk +++ +    +++t+++   +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.RK9DU  51 KFYRNYAKAAGFSTRVRSTNRK--GNKIKNQLITCSREGKWKSKISL---TEKTNPTVGLKCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 137
                  6****************98887..777999************99887...8999**************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031013.4E-1551137IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.038300336IPR007527Zinc finger, SWIM-type
PfamPF044342.1E-5301333IPR007527Zinc finger, SWIM-type
SMARTSM005758.1E-4311338IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 443 aa     Download sequence    Send to blast
MDDSTSDCQL NQGEVDYEFE SNEVPEPLFV VDDQFVLKVG MTFTTLEDAE KFYRNYAKAA  60
GFSTRVRSTN RKGNKIKNQL ITCSREGKWK SKISLTEKTN PTVGLKCPAR IYIHTLKDVG  120
AWIISKVVLD HSHPCCPSKA EMLKQHRELN MSIRRTIENN EEADLYEDRH IWVPIYLDHH  180
FWAGMRSTQR SESMHSFFNK FITRNSSLFQ FVKQYDNCLG SREQAERESD AADFHTVIPC  240
ATKSSIEAQF QDVYTHQKFR EVQAQFRGKA NCITRLTNSA LGYSVYEVGE QISSSIFNKF  300
VVTYDSIAAK IKCQCLLFES RGILCRHALS VLSFEQVSRV SPRYILERWS KKVKRRHTHI  360
KSSHDEPLLE PRSKRFDQLV FRSQNICEFA SESEELTVIL HRAYDNVMAE MESLKAKRKG  420
TSSLSHEDAN LESVNELQSP PRI
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.RK9DU
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A1M90.0A0A445A1M9_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.21e-34far-red elongated hypocotyls 3