PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RM4ZT
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 471aa    MW: 54218.3 Da    PI: 10.4933
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RM4ZTgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR157.35.2e-181197191
         FAR1  1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91
                 kfY++YAk vGFs+r+++++k+   +ei+++  +Cs+egk +++ +    +++t+++   +C  ++ ++  k  g w ++k++l+H+H+++p
  Araip.RM4ZT 11 KFYKDYAKAVGFSTRVRSTNKK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTASLNCSTRIYIHSLKdVGAWIISKVVLHHSHPCCP 97
                 6****************98887..8889*************998877...89999*************998879***************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.0E-151197IPR004330FAR1 DNA binding domain
PROSITE profilePS509668.889243275IPR007527Zinc finger, SWIM-type
PfamPF044341.6E-4249272IPR007527Zinc finger, SWIM-type
SMARTSM005756.4E-4250277IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 471 aa     Download sequence    Send to blast
MTFNTLEDAA KFYKDYAKAV GFSTRVRSTN KKGNEIKNQL ITCSREGKWK SKISPTEKTN  60
PTASLNCSTR IYIHSLKDVG AWIISKVVLH HSHPCCPTQA KMLNQHRELS MSIHRTIENN  120
EKADHHIWVP IYLDHHFWAG MRSTKRSESM HSFFNKFITR NSSLIQFVKQ YDNYLGSREQ  180
RERESDAADF HTIIRCATKS SIEAQFQHVY THQKFREVQA QFRGKANCIT RLTKLENKFP  240
AQYSTIAAQV KCQCLLFESR GILCRHALSV LSFERVTQVS PRYILERWSN KVKRQHTHIK  300
SSDDKPLLEP RSKRFDELVF QSEELTAILH RAYDNVMVEM EELKAKRKGT CSLSQEDANL  360
KSVNELQSPP RVRTRGRPKN RLGSKLDKQI ANASKKKKTK ALNELNLFDA ALVVQPNSSQ  420
YHGHVMNYQF REPAAGIGIL LFNGLGLGFI VLGFRGLGFR VLGFRVLGFR V
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.RM4ZT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371781e-116HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.11e-173protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445A8500.0A0A445A850_ARAHY; Uncharacterized protein
TrEMBLA0A445ET060.0A0A445ET06_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G15090.11e-27FAR1 family protein