PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RM7C3
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 500aa    MW: 57155 Da    PI: 9.6869
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RM7C3genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR155.61.7e-1738124191
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 
                  kfY++YAk +GFs+r++ ++++   +ei+++  +Cs+egk +++ +    +++t++    +C a++ ++  k  g w ++k++l+H+H+++p
  Araip.RM7C3  38 KFYRNYAKAAGFSTRVRCTNRK--GNEIKNQLITCSREGKWKSKISP---TEKTNPIAGLNCPARIYIHTLKdVGAWIISKVVLDHSHSCCP 124
                  6***************998776..8889*************998877...999***************998879**************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031017.8E-1538124IPR004330FAR1 DNA binding domain
PROSITE profilePS509669.137287323IPR007527Zinc finger, SWIM-type
PfamPF044341.1E-4289320IPR007527Zinc finger, SWIM-type
SMARTSM005758.0E-4298325IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 500 aa     Download sequence    Send to blast
MGVFTVLTRC IVQPLSVVDD ELVPKVGMTF TTLEDAEKFY RNYAKAAGFS TRVRCTNRKG  60
NEIKNQLITC SREGKWKSKI SPTEKTNPIA GLNCPARIYI HTLKDVGAWI ISKVVLDHSH  120
SCCPSKAEML KQHRELSMSI HRTIENNEEA DLYEHRHIWV PIYLDHHFWA GMRSTQRSES  180
MHSFFNKYIT QNSSFIQFVK QYDNCLRSRE QAERESDAAD FHTVIPCATK SSIEAQFQDA  240
YTHAKFREVQ AQLRGKANCI TRLKNSALGY SVYEVGEQVS SSIFNKFVVT YDSVAAKVKC  300
QCLLFESRGI LCRHALSVLS FEQVSQVSPR YILERWSKKV KRRHTHIKSS HDEPLMEPRS  360
KRFDQLVFRS QNICEFASES EELTAILHRA YDNVIAEMES LKAKRKGTSS LSHENANLES  420
VNELQSTPRI RTRGRPKNRL GSKLDKQITN ATKKKKTRVL SEINLFDAAS AVHSNSSQYQ  480
AHVMNYQFRV LGAGDNSLGV
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.RM7C3
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ6371780.0HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020997233.10.0protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBLA0A445B3W80.0A0A445B3W8_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2114477
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G22170.23e-35far-red elongated hypocotyls 3