PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RQ6P2
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 681aa    MW: 80059.7 Da    PI: 8.0969
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RQ6P2genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR1674.9e-21131221189
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 
                  +fY+ Y+k+ GF vrk+k +++ +n+ +t+++fvC +eg+r++ +++  ++++r++++etr+gC a++ v+ +  +g+w  + ++ eHnH++
  Araip.RQ6P2 131 SFYQLYSKMNGFAVRKNKIRRNVKNE-VTQQQFVCFREGFRNSGSENdsHRHKRKPKPETRCGCLAEMCVHVHVeSGRWITSYFQDEHNHDM 221
                  5********************96665.**************998888667889999***************9999***************98 PP
2FAR144.84.1e-14436516180
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk..tekerrtraetrtgCkaklkvkkekdgkwevtk 80 
                  +fY+ Y+k+ GF vrk+k +++ +n+ +t+++fvC +eg+r++  ++  ++ +r  ++etr+gC ak+ v++ +++  ++++
  Araip.RQ6P2 436 SFYQLYSKMNGFAVRKNKIRRNVKNE-VTQQQFVCFREGFRDPGFENdsHQCKRALKPETRCGCLAKICVHLGYKHLRYIHR 516
                  5********************96665.***************9877754667788999*************99887777766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031016.6E-19131221IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.064327365IPR007527Zinc finger, SWIM-type
SMARTSM005750.0072340367IPR006564Zinc finger, PMZ-type
PfamPF044342.2E-4342364IPR007527Zinc finger, SWIM-type
PfamPF031011.3E-11436512IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.064603641IPR007527Zinc finger, SWIM-type
SMARTSM005750.0072616643IPR006564Zinc finger, PMZ-type
PfamPF044342.2E-4618640IPR007527Zinc finger, SWIM-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 681 aa     Download sequence    Send to blast
MSKRETRFSN PLSLLFCVFP RYFRYNLMTC LDEEIIDHFE SSLFSQDEDV RADNDPLAWE  60
DIEGCHVSEN YAEEVQGVDC NVDEFFGDTF YDNLDERAVD GINELRYMNL KEITASEVRL  120
LHFWDRTVSF SFYQLYSKMN GFAVRKNKIR RNVKNEVTQQ QFVCFREGFR NSGSENDSHR  180
HKRKPKPETR CGCLAEMCVH VHVESGRWIT SYFQDEHNHD MLDDRLTFML PGHRNMNDTA  240
IDQMNLMLKV GIKTPQIYSS FVHIAGGFQN VPFLKKDIYN QISPLHALER SAFRPMLSRA  300
CTLKVRSCTL TPSCEIYTLS RSGNPNKEWN VSQYRDRSIF KCSCFRMESL GIPCDHIVAV  360
LVHLDAEEIP KSLLIDRWSK NVRSKVWEFM ENGPFCWESM RTCRNWTIND MYINLKEITA  420
SEVRLLHFWD RTVSFSFYQL YSKMNGFAVR KNKIRRNVKN EVTQQQFVCF REGFRDPGFE  480
NDSHQCKRAL KPETRCGCLA KICVHLGYKH LRYIHRLCTL RVDSKIDFIE QFLRCICQMR  540
SREAQSELAS VIGDLVLQSP LHALERSAFR PMLSRACTLK VRSCTLTPSC EIYTLSRSGN  600
PNKEWNVSQY RDRSIFKCSC FRMESLGIPC DHIVAVLVHL DAEEIPKSLL IDRWSKNVRS  660
KVWEFMEKCP FYWVSMRTCH N
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.RQ6P2
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015939157.11e-109protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A445AJY70.0A0A445AJY7_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3613639
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38180.18e-17FAR1-related sequence 5