PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.RVR18
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 252aa    MW: 29518.8 Da    PI: 4.462
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.RVR18genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-071449148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W++eEd++l  +v+++G            + R++k+c++rw +yl
      Araip.RVR18 14 KGAWSEEEDKKLTAYVERYG------------LLRCGKSCRLRWMNYL 49
                     79******************............479***********97 PP
2Myb_DNA-binding55.71.2e-1755100148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ ++ E++l+ d++kq+G++ W++Ia+ ++ gRt++++k++w+++l
      Araip.RVR18  55 RGNYSQKEEQLIMDLHKQHGNK-WSLIAENLP-GRTDNEIKNYWHSHL 100
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512947.013949IPR017930Myb domain
SuperFamilySSF466897.91E-241196IPR009057Homeodomain-like
SMARTSM007176.3E-61351IPR001005SANT/Myb domain
PfamPF002494.6E-61449IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.4E-131556IPR009057Homeodomain-like
PROSITE profilePS5129425.82350104IPR017930Myb domain
SMARTSM007173.8E-1654102IPR001005SANT/Myb domain
PfamPF002498.3E-1655100IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.1E-2557102IPR009057Homeodomain-like
CDDcd001671.13E-1057100No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 252 aa     Download sequence    Send to blast
MVRAPYFDAN GIKKGAWSEE EDKKLTAYVE RYGLLRCGKS CRLRWMNYLR PNLKRGNYSQ  60
KEEQLIMDLH KQHGNKWSLI AENLPGRTDN EIKNYWHSHL KKFQNCNVNN TSSDDDDDDD  120
LNKSKSSSQN TKEHERPKSE VLTFTTDDDN DDDSHHILES SLSNVTTESS YSYTEEEEDN  180
KGNNNNNNAW LCFSSGHEEE SNREEDRFAS WGATTLFDEF GSSFWTEPFI SDDAFSQDYN  240
YILYDREDPF FI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A2e-22141027106B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.RVR18
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016193298.11e-160transcription factor MYB14-like
RefseqXP_025641078.11e-160transcription factor MYB14-like
SwissprotQ9SJX81e-44MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A445A5H21e-159A0A445A5H2_ARAHY; Uncharacterized protein
STRINGGLYMA06G45520.13e-78(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF35633186
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G74080.17e-44myb domain protein 122
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]