PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.RW92I

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

Protein Properties

Length: 239aa MW: 27356 Da PI: 10.0976

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.RW92I	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.4	4.6e-17	140	229	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 f+k++++s+v+ +l l+ +f+++h + ++ +tl de+g ++e + rk++ l++GW++F a++L +gD +vF+l++r++f +v ++r Araip.RW92I 140 FVKTMLQSHVTGGFWLGLSVQFCKTHLPN--RDERITLIDEDGDEYETLYLARKTG----LSAGWRGFSIAHNLVDGDALVFELISRTTF--KVYIVR 229 89**********************533..5557***********656665....***********************98888..777776 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.8E-21	133	230	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	1.88E-24	133	231	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	8.81E-27	138	229	No hit	No description
Pfam	PF02362	3.6E-14	140	229	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	12.069	140	231	IPR003340	B3 DNA binding domain
SMART	SM01019	6.1E-24	140	231	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 239 aa Download sequence Send to blast
MTAKASEYEE IRRKRLEENK KRMEALNLPN LSQALHTSPL SKSKSHSPSP LKRVKSRTIE 60 KQVVVVRRSS RVANMPAPVY KEVVIDRVVT PRSRRYGGSY DRYRDYSKRV YASDEARQEA 120 LDKADKIQSD LQSKSHHPSF VKTMLQSHVT GGFWLGLSVQ FCKTHLPNRD ERITLIDEDG 180 DEYETLYLAR KTGLSAGWRG FSIAHNLVDG DALVFELISR TTFKVYIVRV NSPAEGEEQ

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.RW92I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016174093.1	1e-178	B3 domain-containing protein At5g42700
Refseq	XP_025679908.1	1e-178	B3 domain-containing protein At5g42700
Swissprot	Q9FMZ4	8e-73	Y5270_ARATH; B3 domain-containing protein At5g42700
TrEMBL	A0A444XDM5	1e-177	A0A444XDM5_ARAHY; Uncharacterized protein
STRING	XP_004501577.1	1e-115	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF3336	31	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G42700.1	6e-68	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]