PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.S2J45

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 487aa MW: 55733.9 Da PI: 7.6989

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.S2J45	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	58.7	1.9e-18	51	137	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk+vGFs+r+++++k+ +ei+++ +Cs+egkr+++ + +++t+++ +C a++ ++ k w ++k+ l+H+H+++p Araip.S2J45 51 KFYKDYAKDVGFSTRVRSTNKK--GNEIKNQLITCSREGKRKSKISP---TEKTNPTAGLNCSARIYIHTLKdVCAWIISKVMLHHSHPCCP 137 6**************98887..8889**********99877...8999**********9988789************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.6E-15	51	137	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.174	280	316	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	1.2E-4	282	313	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	6.3E-4	291	318	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 487 aa Download sequence Send to blast
MDDSTSDCQL NQGEVDFEFE SNEVPEPLSV VDEQLISKVG MTFKTLEDAG KFYKDYAKDV 60 GFSTRVRSTN KKGNEIKNQL ITCSREGKRK SKISPTEKTN PTAGLNCSAR IYIHTLKDVC 120 AWIISKVMLH HSHPCCPTQA EMLKQHRELS MSVRRTIENN EEVGMKSTQR SESMHLFFNK 180 FIIRNSSLIQ FFKQYDNCLR SREQAERESD ATNFHTVIPC AIKSSIEAQF QDVYTHQKFR 240 EVQAQFRGKA NCITRLMNSA LGYSVYEVGE QVSSSIFNKF VVTYDSVAAE VKCQCLLFES 300 RGILCRHALS VLSFERSSHD ELLLEPRSKR FDELVFRSQN ICEFASESEE LTAILHRAYD 360 NVMVEMESLK AKRKGTSSLS HEDANLESIN DLQSPPRIRT RGRPKNRLGS KLDKQIANAS 420 KKKKTKALNE LNLFDAASVV RSHSSQYQGR VMNYQFREPA VADNSLGEHH LYIEDENPLE 480 HEKDPYN

Sequence ? help Back to Top

Protein Sequence Length: 487 aa Download sequence Send to blast

MDDSTSDCQL NQGEVDFEFE SNEVPEPLSV VDEQLISKVG MTFKTLEDAG KFYKDYAKDV  60
GFSTRVRSTN KKGNEIKNQL ITCSREGKRK SKISPTEKTN PTAGLNCSAR IYIHTLKDVC  120
AWIISKVMLH HSHPCCPTQA EMLKQHRELS MSVRRTIENN EEVGMKSTQR SESMHLFFNK  180
FIIRNSSLIQ FFKQYDNCLR SREQAERESD ATNFHTVIPC AIKSSIEAQF QDVYTHQKFR  240
EVQAQFRGKA NCITRLMNSA LGYSVYEVGE QVSSSIFNKF VVTYDSVAAE VKCQCLLFES  300
RGILCRHALS VLSFERSSHD ELLLEPRSKR FDELVFRSQN ICEFASESEE LTAILHRAYD  360
NVMVEMESLK AKRKGTSSLS HEDANLESIN DLQSPPRIRT RGRPKNRLGS KLDKQIANAS  420
KKKKTKALNE LNLFDAASVV RSHSSQYQGR VMNYQFREPA VADNSLGEHH LYIEDENPLE  480
HEKDPYN

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.S2J45

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020986710.1	0.0	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445ESL4	0.0	A0A445ESL4_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-19	far-red elongated hypocotyls 3