PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.S3MIZ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family ERF
Protein Properties Length: 259aa    MW: 29090 Da    PI: 6.5269
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.S3MIZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP254.43.1e-174899155
          AP2  1 sgykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                 s y+GV++++ +grW+A+I   +   g +k+ +lg++ t eeAa a++ a+ +++g
  Araip.S3MIZ 48 SVYRGVTRHHHNGRWEARIGRvF---G-NKYLYLGTYATQEEAAMAYDMAAIEYRG 99
                 78****************99966...3.6*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.77E-1848109IPR016177DNA-binding domain
PfamPF008471.8E-134899IPR001471AP2/ERF domain
CDDcd000186.98E-2548109No hitNo description
PROSITE profilePS5103218.13649107IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-1849108IPR001471AP2/ERF domain
SMARTSM003802.5E-2549113IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 259 aa     Download sequence    Send to blast
MAKKKTLVIK NNDSNSSSSS SAATPSKKVV KKRTRKTIPR DSPPQRSSVY RGVTRHHHNG  60
RWEARIGRVF GNKYLYLGTY ATQEEAAMAY DMAAIEYRGL NAVTNFDLSH YINWLRPKLQ  120
EIQKNPSQNN QEQSSSGSEL DNNQLVFGYD QAGLTTSETG SEDSTQFKTG GETVPTSALE  180
ILLKSSKLKE MLVRNSVDED NLHSQTSSES NPTPRRTFPE DIQTFFESHD SNLYTENDDI  240
IFGELGSISA PFFQYELDA
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.S3MIZ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016177321.11e-155AP2-like ethylene-responsive transcription factor At1g16060
RefseqXP_025679918.11e-155AP2-like ethylene-responsive transcription factor At1g16060
SwissprotQ94AN41e-38AP2L1_ARATH; AP2-like ethylene-responsive transcription factor At1g16060
TrEMBLA0A444XBM01e-154A0A444XBM0_ARAHY; Uncharacterized protein
STRINGcassava4.1_025233m1e-67(Manihot esculenta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2996822
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16060.23e-39ARIA-interacting double AP2 domain protein
Publications ? help Back to Top
  1. Todd J,Post-Beittenmiller D,Jaworski JG
    KCS1 encodes a fatty acid elongase 3-ketoacyl-CoA synthase affecting wax biosynthesis in Arabidopsis thaliana.
    Plant J., 1999. 17(2): p. 119-30
    [PMID:10074711]
  2. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]