PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.S3SDU
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 106aa    MW: 12921.8 Da    PI: 10.5565
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.S3SDUgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR142.62e-131295190
         FAR1  1 kfYneYAkevGFsvrksk...skkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkekdgkwevtkleleHnHela 90
                 +fYneY++  GFs+r+sk    kk + +g ++++ f+Cs++g+r+ ++ +    r++r+ +    +a ++v    +g+w+v+ ++ +HnH++ 
  Araip.S3SDU 12 DFYNEYSRIKGFSIRRSKvghCKKARSEGDVIWQIFMCSRQGERDAKHVH----RTNRKMDPRPINA-MRV----NGRWYVEFFSDKHNHNML 95
                 6**************9861114566999****************998877....4444444333333.444....678************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031014.8E-111295IPR004330FAR1 DNA binding domain
Sequence ? help Back to Top
Protein Sequence    Length: 106 aa     Download sequence    Send to blast
MIEFVDLKTT YDFYNEYSRI KGFSIRRSKV GHCKKARSEG DVIWQIFMCS RQGERDAKHV  60
HRTNRKMDPR PINAMRVNGR WYVEFFSDKH NHNMLEERFR GMMRSQ
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.S3SDU
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_015962293.13e-58protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444ZXR42e-53A0A444ZXR4_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF3290752
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G59470.22e-07FAR1 family protein