PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.S69RF

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 382aa MW: 43881.6 Da PI: 9.8002

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.S69RF	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	48.7	2.6e-15	27	112	1	90
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHela 90 kfY++Y+k +GFs++++++++ ++i+++ vCs+eg+ +++++ + +t+++ +C+a++ v+ +k g ++k++l+H+H+++ Araip.S69RF 27 KFYKHYSKLAGFSTKIRNTTRD--GDKIKNQLVVCSREGRWKSKRSP---TLKTNPSAGLNCTARIYVHIMKdVGLRTISKVVLNHSHPCC 112 6**************98776..88899999****9998766...999**************989999*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	8.2E-12	27	112	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	8.172	268	312	IPR007527	Zinc finger, SWIM-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
MQTSCVVDEK FVPKMGMIFK TLEEVGKFYK HYSKLAGFST KIRNTTRDGD KIKNQLVVCS 60 REGRWKSKRS PTLKTNPSAG LNCTARIYVH IMKDVGLRTI SKVVLNHSHP CCVDQAEMLK 120 QHREFSIFVR RTIETHEKAG IRPSKTYKLF VAAAGSHREL ACTVFGSPDL IIFVRAVRGS 180 PYIDSSLLGS PLLGRDEKHA KEREEQIERE FDAADFHTVI PCVTKSAIEA QFQRVYTHEK 240 FREVQAQFRG KVNCITRSMH STLGFTTYEV IEQISNSIFN KFVVTYNACH CLLVESRGIL 300 CRHSLSVLSF ERVDNVTPKH ILERWSKNIK RRHTHIKSIQ DEPLLESKSK RFDELVFQSH 360 NICEFASESK ELTGILHRAF DK

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

MQTSCVVDEK FVPKMGMIFK TLEEVGKFYK HYSKLAGFST KIRNTTRDGD KIKNQLVVCS  60
REGRWKSKRS PTLKTNPSAG LNCTARIYVH IMKDVGLRTI SKVVLNHSHP CCVDQAEMLK  120
QHREFSIFVR RTIETHEKAG IRPSKTYKLF VAAAGSHREL ACTVFGSPDL IIFVRAVRGS  180
PYIDSSLLGS PLLGRDEKHA KEREEQIERE FDAADFHTVI PCVTKSAIEA QFQRVYTHEK  240
FREVQAQFRG KVNCITRSMH STLGFTTYEV IEQISNSIFN KFVVTYNACH CLLVESRGIL  300
CRHSLSVLSF ERVDNVTPKH ILERWSKNIK RRHTHIKSIQ DEPLLESKSK RFDELVFQSH  360
NICEFASESK ELTGILHRAF DK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.S69RF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015960283.1	1e-158	protein FAR1-RELATED SEQUENCE 6-like
TrEMBL	A0A444YIT9	0.0	A0A444YIT9_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	1e-13	far-red elongated hypocotyls 3