PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.S7G8I

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 403aa MW: 46242.4 Da PI: 9.5312

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.S7G8I	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	24.6	8.3e-08	30	71	50	91
FAR1 50 kerrtraetrtgCkaklkvkkekdgkwevtkleleHnHelap 91 ++t+++++ +Cka++ vk++k+ ++++t ++ +HnH+++p Araip.S7G8I 30 PLKKTNPTSEQNCKARIIVKRNKKMEYVLTFVNIQHNHAISP 71 568899********************************9875 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.2E-6	32	71	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 403 aa Download sequence Send to blast
MAFSSMKDYE NFYTNYAKRI TGYRRSKIDP LKKTNPTSEQ NCKARIIVKR NKKMEYVLTF 60 VNIQHNHAIS PSMAKTLRKN RELSLHAKRI AEINDQTGVT IRNTYQSLAT AAGGYDKLTF 120 TQKDLRNHVA RSVRVCTKNV TGGSLFFLAT AGMSSTQRSE SMHSFMKGYL TSKSKLQQFV 180 TQYDNCLTNK AQQEYELDAA SFNTIIPCAT TSAIEKQFQK EYTHAKFNEL QKEFRAKANW 240 FSTKEHEEGY VVTYMVIEEI ENGDKMFDVS FDSSLQMFLV NAIFLSQRKS YAGIVFQSLK 300 TLKRKHSSIK CSHDPSRLEP VKKRYDEMCK QFYNITEVAA ASEEPTETVH HILDSVEPKA 360 SSMDNVDNQN SKEVDENAND LEINNPNKYH EKVVGIRKGF NLL

Sequence ? help Back to Top

Protein Sequence Length: 403 aa Download sequence Send to blast

MAFSSMKDYE NFYTNYAKRI TGYRRSKIDP LKKTNPTSEQ NCKARIIVKR NKKMEYVLTF  60
VNIQHNHAIS PSMAKTLRKN RELSLHAKRI AEINDQTGVT IRNTYQSLAT AAGGYDKLTF  120
TQKDLRNHVA RSVRVCTKNV TGGSLFFLAT AGMSSTQRSE SMHSFMKGYL TSKSKLQQFV  180
TQYDNCLTNK AQQEYELDAA SFNTIIPCAT TSAIEKQFQK EYTHAKFNEL QKEFRAKANW  240
FSTKEHEEGY VVTYMVIEEI ENGDKMFDVS FDSSLQMFLV NAIFLSQRKS YAGIVFQSLK  300
TLKRKHSSIK CSHDPSRLEP VKKRYDEMCK QFYNITEVAA ASEEPTETVH HILDSVEPKA  360
SSMDNVDNQN SKEVDENAND LEINNPNKYH EKVVGIRKGF NLL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.S7G8I

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016177879.1	1e-107	uncharacterized protein LOC107620192
TrEMBL	A0A445AGC7	1e-145	A0A445AGC7_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	3e-12	FAR1 family protein