PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.S98FB
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family DBB
Protein Properties Length: 173aa    MW: 19398.9 Da    PI: 5.8216
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.S98FBgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box231.6e-07433534
     zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeH 34
                  C+ +e+  ++lfC  ++  lC++C ++ H
  Araip.S98FB  4 LCDVCENAAAILFCAADEAALCRSCDDKVH 33
                 7*******9*****************9998 PP
2zf-B_box27.47.1e-095292238
     zf-B_box  2 eerkCpeHeekelqlfCedCqqllCedClleeHkg....Ht 38
                 + ++C+ +e+ ++ ++Ce +++ lC +C +  H g    H+
  Araip.S98FB 52 DVPRCDICENAPAFFYCEIDGSSLCLQCDMIVHVGgkrtHE 92
                 6799**************************99966666776 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003365.7E-8147IPR000315B-box-type zinc finger
PROSITE profilePS5011910.068147IPR000315B-box-type zinc finger
CDDcd000211.18E-5345No hitNo description
PfamPF006431.9E-6342IPR000315B-box-type zinc finger
SMARTSM003368.0E-115196IPR000315B-box-type zinc finger
PROSITE profilePS501199.2435196IPR000315B-box-type zinc finger
PfamPF006438.8E-75292IPR000315B-box-type zinc finger
CDDcd000211.77E-65493No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 173 aa     Download sequence    Send to blast
MRTLCDVCEN AAAILFCAAD EAALCRSCDD KVHMCNKLAS RHVRVGLADP SDVPRCDICE  60
NAPAFFYCEI DGSSLCLQCD MIVHVGGKRT HERYLLLRQR IEFPSDKTGG LDEFGLQTLD  120
QNEPRRDQSQ SIKLNARDNH QSHNHKDKDI LGSNNHDSIG VVPVELFKQE AEK
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of seedling photomorphogenesis. {ECO:0000269|PubMed:18540109}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.S98FB
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016186933.11e-119B-box zinc finger protein 19
RefseqXP_016186934.11e-119B-box zinc finger protein 19
RefseqXP_025642408.11e-119B-box zinc finger protein 19
RefseqXP_025642409.11e-119B-box zinc finger protein 19
RefseqXP_025686694.11e-119B-box zinc finger protein 19
RefseqXP_025686695.11e-119B-box zinc finger protein 19
SwissprotC0SVM54e-74BBX19_ARATH; B-box zinc finger protein 19
TrEMBLA0A445A8J81e-118A0A445A8J8_ARAHY; Uncharacterized protein
TrEMBLA0A445E3691e-117A0A445E369_ARAHY; Uncharacterized protein
STRINGXP_006487374.14e-90(Citrus sinensis)
STRINGXP_006423480.14e-90(Citrus clementina)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF27343370
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G38960.12e-76DBB family protein