PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.S9EMR
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 1058aa    MW: 118213 Da    PI: 7.654
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.S9EMRgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.23.4e-12485529246
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      g+WT eEd ll+ +v+q+G ++W  I++ +g++Rt+ qc  r+q 
      Araip.S9EMR 485 GPWTSEEDRLLLLLVQQMGIRNWFDISKSLGTNRTPFQCLARFQR 529
                      89***************************************9995 PP
2Myb_DNA-binding39.11.7e-12539581346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       W++eEd +l  av+ +G  +W ++a+ +  +Rt+ qc +rw k
      Araip.S9EMR 539 EWSKEEDAQLCSAVAIYGESNWQAVASVLE-RRTGTQCSNRWKK 581
                      6*****************************.***********98 PP
3Myb_DNA-binding40.56.3e-13588631146
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                      +g+ T+eEd++l  av ++G + W+ Iar ++ gRt  qc++r+ +
      Araip.S9EMR 588 KGSYTQEEDKRLTVAVMLFGRK-WNQIARFVP-GRTQCQCRDRYVN 631
                      6899****************99.*********.***********77 PP
4Myb_DNA-binding44.34.2e-14641682346
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 
                       WT eEd +l  a++++G   W+++a+ m+  Rt+ qc+ r+  
      Araip.S9EMR 641 GWTDEEDSRLQAAIAKHGFC-WSKVAEDMP-PRTDSQCRKRFKV 682
                      5*******************.*********.9*********986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500905.552351440IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.603.5E-6353377IPR009057Homeodomain-like
SMARTSM007171.9355447IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.603.5E-6420443IPR009057Homeodomain-like
SuperFamilySSF466899.66E-16471531IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.4E-14474535IPR009057Homeodomain-like
PROSITE profilePS5129418.359479535IPR017930Myb domain
SMARTSM007173.3E-12483533IPR001005SANT/Myb domain
CDDcd001674.63E-9486531No hitNo description
PfamPF139215.2E-16487548No hitNo description
SuperFamilySSF466891.24E-23534629IPR009057Homeodomain-like
SMARTSM007176.1E-12536585IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.6E-14538585IPR009057Homeodomain-like
PROSITE profilePS5129414.101538587IPR017930Myb domain
CDDcd001671.32E-11539583No hitNo description
PROSITE profilePS500909.094587633IPR017877Myb-like domain
SMARTSM007174.5E-12587635IPR001005SANT/Myb domain
PfamPF002491.9E-11588631IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.604.5E-19590640IPR009057Homeodomain-like
CDDcd001674.50E-8590633No hitNo description
SuperFamilySSF466892.59E-22613686IPR009057Homeodomain-like
PROSITE profilePS5129420.26634688IPR017930Myb domain
SMARTSM007172.8E-11638686IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-16641681IPR009057Homeodomain-like
PfamPF002492.0E-12641682IPR001005SANT/Myb domain
CDDcd001671.03E-11642684No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1058 aa     Download sequence    Send to blast
MAPRADQDSL SSTDDDESDD EGLKEDLAAL SRAFDMSGAD STTPPDPVLQ VDFDDDVRGG  60
VSTAPPPAAS TDLVVRTDSG DELRNDPLLA TGDAVVSFDA VDSGGYESNE DIEYLQRLQS  120
LYKPLATLPP PSPSPPPVDV FDDDDDDDVE TVRAIFKRFA DYDMRGLGTM TEGDQATSPG  180
PERDIANGST SSVIVEGGET CPVYHDRTNS TDFMTGNTEM QHSGLAESSN PDASTVSRLP  240
RRRSSFPPLA QALFDALKKN RSLQKFIRSK MIEIEAKIEE NKRLRNNVKI LKDFQASCIR  300
RTGSALSLKK DPRVLLISAQ KSDSKRKSPM CFGPPENRHV ANYKMVLERF PRSLDRKKWS  360
NEEKENLMKG IKQQFQESLV IAMSSEVPHG DGNYMDSIME YTNQVDITPE IMKKYLPDVN  420
WDKLASTHVP GRTGAECESR ILQRSMTITI SLPTFLDFMS SRATLILQCT VDRWLNWEDP  480
LINHGPWTSE EDRLLLLLVQ QMGIRNWFDI SKSLGTNRTP FQCLARFQRS LNPSMLNREW  540
SKEEDAQLCS AVAIYGESNW QAVASVLERR TGTQCSNRWK KSLFPERKGS YTQEEDKRLT  600
VAVMLFGRKW NQIARFVPGR TQCQCRDRYV NSLNPSLKWG GWTDEEDSRL QAAIAKHGFC  660
WSKVAEDMPP RTDSQCRKRF KVLFPDQAYL LQEARKKQKS LIAGNFVDRE SERPNLTLTD  720
FLPLPTLSPL PCEADDENLP RKRKRKSSNE HKKFRSRRPA KKTRTNHNDG KDIDEAKIFN  780
GDVNIPKRTR SKKNSRNTSV HAKEAENTIQ NAEIQVCSGK LSRIKGAKTS KNKLKNKMLK  840
PESLSTVVEC SGSQNEDNTT LSSFLHMKLN KRGLKCNKNK GGAASAFATN VVSKQVDNQS  900
PSAEQDGLSQ LCGSGGVEHL VTVQNNSVSD RLLRKPENVN RLTGDEDDNE DITLDCLVGN  960
KSKECSQVTK GPSVLSSSKS KHASVLLPEV HCTEKAAITA DCTGQLTPNL VDDRSVSPSS  1020
LAEPTTTFNA EEDELLATFL QNKSKGARRK VKRKEGNC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h88_C1e-264676809155MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-264676809155MYB PROTO-ONCOGENE PROTEIN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1676698RKRFKVLFPDQAYLLQEARKKQK
2740745RKRKRK
3744758RKSSNEHKKFRSRRP
410471053RRKVKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.S9EMR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016203523.10.0uncharacterized protein LOC107644225 isoform X1
RefseqXP_025655790.10.0uncharacterized protein LOC112751028 isoform X1
TrEMBLA0A445D1U40.0A0A445D1U4_ARAHY; Uncharacterized protein
STRINGXP_004512739.10.0(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF74413344
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18100.11e-161myb domain protein 4r1