PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.SA442

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

C3H

Protein Properties

Length: 108aa MW: 12610.3 Da PI: 8.2

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.SA442	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	18.8	2.9e-06	14	38	1	25
--S---SGGGGTS--TTTTT-SS-S CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaH 25 ++++ C +++rtG+C yG+ +F+H Araip.SA442 14 PGEADCIYYLRTGFCGYGSCYRFNH 38 57899*************9755555 PP

Sequence ? help Back to Top
Protein Sequence Length: 108 aa Download sequence Send to blast
MALGAAKESY PQRPGEADCI YYLRTGFCGY GSCYRFNHFR DRTEVVGVVA RTGGGEYSER 60 IGQPLCQLHF IWDAEYDLAI RKIFDYRMGR RLQQMLDDVC HSRDQRTR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.SA442

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_024996403.1	2e-27	zinc finger CCCH domain-containing protein 34-like
Swissprot	Q6NPN3	3e-19	C3H58_ARATH; Zinc finger CCCH domain-containing protein 58
TrEMBL	A0A103XIN1	3e-26	A0A103XIN1_CYNCS; Zinc finger, CCCH-type
STRING	Migut.G00186.1.p	1e-24	(Erythranthe guttata)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF19228	3	4

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18550.1	1e-21	C3H family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]