PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.SB6JF
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family bHLH
Protein Properties Length: 339aa    MW: 37541.8 Da    PI: 6.9197
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.SB6JFgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.21.3e-12182229355
                  HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
          HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                  + h ++Er+RR+++ ++f  L  ++P +     kK++Ka++L  A++Y+k+Lq
  Araip.SB6JF 182 QDHVIAERKRREKLSQRFIALSAIVPGL-----KKMDKASVLGDAIKYLKQLQ 229
                  6799************************.....9******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.682179228IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.5E-10182229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-17183242IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474594.19E-17183247IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.04E-13184233No hitNo description
SMARTSM003531.7E-14185234IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MDESVFFHNQ YPMMDSSTIT SSPTPWPQIN LDDIDFNQIQ ESFSSASSPK SYTSNKRFNS  60
SFSPIERPTK QQKNAYSHGI STNTTTTTSN EFMVPKASSS SSSQIISFEQ HSNASSVASY  120
NHHHQQLYNN NPSSDQGNHV LKPKTESVCS ENLDFASVVS QADKANKGSA GAATTRNPTQ  180
AQDHVIAERK RREKLSQRFI ALSAIVPGLK KMDKASVLGD AIKYLKQLQE KVKILEEQVA  240
EKTVESAVFV KRSILFAEDN GSSSEENPEI EARISGKDVL IRIHCDKHSG IVPKIINEIE  300
KHDLSVQSSS FLPFGNNSLD ITIVAQVNIN FNFSLINLL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A2e-13183238863Transcription factor MYC2
5gnj_B2e-13183238863Transcription factor MYC2
5gnj_E2e-13183238863Transcription factor MYC2
5gnj_F2e-13183238863Transcription factor MYC2
5gnj_G2e-13183238863Transcription factor MYC2
5gnj_I2e-13183238863Transcription factor MYC2
5gnj_M2e-13183238863Transcription factor MYC2
5gnj_N2e-13183238863Transcription factor MYC2
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1187192ERKRRE
2188193RKRREK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.SB6JF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016186555.10.0transcription factor bHLH18
RefseqXP_016186558.10.0transcription factor bHLH18
RefseqXP_025627340.10.0transcription factor bHLH18
RefseqXP_025627341.10.0transcription factor bHLH18
TrEMBLA0A445ARD90.0A0A445ARD9_ARAHY; Uncharacterized protein
STRINGGLYMA05G23291.11e-104(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45534164
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G37850.19e-52bHLH family protein