PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.SJY96
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family WOX
Protein Properties Length: 439aa    MW: 49850.7 Da    PI: 7.2806
Description WOX family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.SJY96genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox68.87e-22119178357
                  --SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS
     Homeobox   3 kRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 
                  +R+++t+eql++Leel+++ +r+psae++++++++l    +++ ++V++WFqN++a+e++
  Araip.SJY96 119 SRWNPTPEQLRALEELYRRgTRTPSAEQIQHITAQLrrfgKIEGKNVFYWFQNHKARERQ 178
                  7*****************99**************************************97 PP
2Wus_type_Homeobox113.79.3e-37118180365
  Wus_type_Homeobox   3 rtRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 
                        ++RW+PtpeQ++ Leely++G+rtP++e+iq+ita+L+++Gkie+kNVfyWFQN+kaRerqk+
        Araip.SJY96 118 SSRWNPTPEQLRALEELYRRGTRTPSAEQIQHITAQLRRFGKIEGKNVFYWFQNHKARERQKR 180
                        79***********************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003899.3E-5116183IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.606.0E-9119178IPR009057Homeodomain-like
SuperFamilySSF466891.41E-12119184IPR009057Homeodomain-like
PfamPF000461.4E-19119178IPR001356Homeobox domain
CDDcd000862.96E-6120180No hitNo description
PROSITE profilePS5007111.224124179IPR001356Homeobox domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048513Biological Processanimal organ development
GO:0099402Biological Processplant organ development
GO:0005829Cellular Componentcytosol
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 439 aa     Download sequence    Send to blast
MWMVGYNEGG GGDHHHHQLN MVVDHHPHHH HHHPFGASGR KLRPLMPRPM TSPNNSTTTT  60
TTTTNNNNNN NNPCLSLVHN QGNDFFSQYH NHLSTVGEQN KRENGNNNNN GSAPVVVSSR  120
WNPTPEQLRA LEELYRRGTR TPSAEQIQHI TAQLRRFGKI EGKNVFYWFQ NHKARERQKR  180
RRQMESSDNT NNNHNHPLQN NNHHRDFDSS SEKKELAASR TMVEVEQTKN WASSTNCTTL  240
AEESVSMERE GGAGKAGVAE CRADGWVQFE EGELQQRRNF MERNATWHMM MHHHSPCAAA  300
APPAPAPPVT HLINALTPPP PPPSSSLPLL LPLQPSKLIN NNNNLSFFIS SENNYNNTTL  360
LHLTTTRSNE DDDDFVDNSI INIHHHHQNE NQTLQLFPLR SGDDLHHHIN GKGTEISASN  420
DAITPNHHHF FEFLPLKNN
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.SJY96
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020958445.10.0WUSCHEL-related homeobox 1 isoform X1
RefseqXP_025655686.10.0WUSCHEL-related homeobox 1-like isoform X1
TrEMBLA0A444Z1350.0A0A444Z135_ARAHY; Uncharacterized protein
STRINGGLYMA05G33850.21e-131(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF28923471
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18010.12e-50WUSCHEL related homeobox 1