PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.SNG87

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 178aa MW: 20659.3 Da PI: 8.4886

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.SNG87	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	29.7	2.1e-09	32	106	11	89
FAR1 11 GFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHel 89 Fs+++++++k+ ++ei+++ +C++egk +++ + +++t+++ + ak+ v+ k g+w +++++l+H+H++ Araip.SNG87 32 SFSTKIRNTNKK--ENEIKNQLVTCTREGKWKSNISP---TEKTNSSAGLNYPAKIYVHILKdVGVWIISRVVLHHSHPC 106 589998887776..7779************99877...8889999999999999988879**************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	6.7E-7	33	107	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 178 aa Download sequence Send to blast
MNDSSSDRQL NQSEVDYCFE SNQVAEVWFD SSFSTKIRNT NKKENEIKNQ LVTCTREGKW 60 KSNISPTEKT NSSAGLNYPA KIYVHILKDV GVWIISRVVL HHSHPCYPNQ VEMLKQHRSL 120 SFMIQVYLDH HFWAGMKSTQ RSESMHAFLK KFITCNSSLI QFVNQHDNCL GSREQGEK

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.SNG87

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997160.1	2e-53	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A444WQ64	3e-81	A0A444WQ64_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477