PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.SV2MR
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 366aa    MW: 41654.9 Da    PI: 8.595
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.SV2MRgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.76.3e-1976123148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      +g+WT+eEd llv +++++G+g+Wk+I+++ g+ R+ k+c++rw +yl
      Araip.SV2MR  76 KGPWTPEEDILLVSYIQEHGPGNWKAIPSKTGLLRCSKSCRLRWTNYL 123
                      79******************************99************97 PP
2Myb_DNA-binding48.52.1e-15129174148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg++T +E+  ++++ ++lG++ W++Ia++++  Rt++++k++w++yl
      Araip.SV2MR 129 RGNFTNQEENMIIHLQALLGNR-WAAIASYLP-QRTDNDIKNYWNTYL 174
                      89********************.*********.*************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.608.7E-2567126IPR009057Homeodomain-like
PROSITE profilePS5129425.46771127IPR017930Myb domain
SuperFamilySSF466891.01E-3073170IPR009057Homeodomain-like
SMARTSM007178.6E-1675125IPR001005SANT/Myb domain
PfamPF002492.4E-1776123IPR001005SANT/Myb domain
CDDcd001671.49E-1178123No hitNo description
Gene3DG3DSA:1.10.10.602.9E-24127178IPR009057Homeodomain-like
SMARTSM007172.1E-15128176IPR001005SANT/Myb domain
PROSITE profilePS5129419.956128178IPR017930Myb domain
PfamPF002491.1E-14129174IPR001005SANT/Myb domain
CDDcd001676.61E-10131174No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0001666Biological Processresponse to hypoxia
GO:0009617Biological Processresponse to bacterium
GO:0009626Biological Processplant-type hypersensitive response
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009739Biological Processresponse to gibberellin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0042761Biological Processvery long-chain fatty acid biosynthetic process
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 366 aa     Download sequence    Send to blast
VSVHFTHSIY NLIFNYLNSP IYTLTILSLC YAMLGLLHST TQIETNTIES STKKRNYYIF  60
VIMGRPPCCD KEGIKKGPWT PEEDILLVSY IQEHGPGNWK AIPSKTGLLR CSKSCRLRWT  120
NYLRPGIKRG NFTNQEENMI IHLQALLGNR WAAIASYLPQ RTDNDIKNYW NTYLKKRLSK  180
KLEEEKKDGS CLANNNNDFS SQKVVMPRGQ WERRLQTDIN MAKKALTHAL SPQNNNNNNI  240
NIESLSCSSS SNSNSNSCSS NNNNKATQSL SYASNADNIA RLLKGWMKKN NNNDTASSKE  300
GIFGTKVFGS EECLESSNNT NSSLEFSQSI YSQQEESKTE EIGEVLMPFH LLEKWLLDET  360
NIEKFI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1h8a_C2e-257617827128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. {ECO:0000305}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00386DAPTransfer from AT3G28910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.SV2MR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016179105.10.0transcription factor MYB30-like
RefseqXP_025684174.10.0transcription factor MYB30
SwissprotP813924e-99MYB06_ANTMA; Myb-related protein 306
TrEMBLA0A444X8J30.0A0A444X8J3_ARAHY; Uncharacterized protein
STRINGXP_007151227.11e-118(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF101634115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G28910.16e-90myb domain protein 30
Publications ? help Back to Top
  1. Jackson D,Culianez-Macia F,Prescott AG,Roberts K,Martin C
    Expression patterns of myb genes from Antirrhinum flowers.
    Plant Cell, 1991. 3(2): p. 115-25
    [PMID:1840903]