PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.T2TQR
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family Dof
Protein Properties Length: 316aa    MW: 34326.1 Da    PI: 8.5665
Description Dof family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.T2TQRgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-Dof123.95.1e-393593260
       zf-Dof  2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkk 60
                 ++++l+cprC+stntkfCyynnysl+qPryfCk+CrryWt+GG+lrnvPvGgg+rknk 
  Araip.T2TQR 35 PQEQLNCPRCNSTNTKFCYYNNYSLTQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKI 93
                 6899*****************************************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
ProDomPD0074785.0E-273092IPR003851Zinc finger, Dof-type
PfamPF027013.1E-333792IPR003851Zinc finger, Dof-type
PROSITE profilePS5088428.8543993IPR003851Zinc finger, Dof-type
PROSITE patternPS0136104177IPR003851Zinc finger, Dof-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009639Biological Processresponse to red or far red light
GO:0009845Biological Processseed germination
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MEGIGPNNNS CTTRPHNNEG GGGNNNNNLE KKARPQEQLN CPRCNSTNTK FCYYNNYSLT  60
QPRYFCKTCR RYWTEGGSLR NVPVGGGSRK NKIKINTNNN NNNNNSSSSS STTSTPSSNS  120
KVLVHQDLLN PNNNRVIQGQ DLNLAFPSMD HHNNYHHGLL PFIDMVNNNN NSSSNNNNNN  180
SNGDAPSSLS ALELLRSSMA SRGLSNPYYA SSNSSLVPSN SSSVIYPTSG LGFPTMQEVV  240
NNNKQNSGNL GFSSSSSIMD HQENIVNNSD GGGRVLFPFG EVMKSAEENN NKEQGNNSSS  300
TANGGYWNGM MGQGSW
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.T2TQR
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF2209325e-57KF220932.1 Glycine max cultivar Pureun clone 2f2r Dof-type zinc finger DNA-binding family protein (Glyma16g02550) gene, partial cds.
GenBankKF2209345e-57KF220934.1 Glycine max cultivar Ilpumgeomjeong clone 2f2r Dof-type zinc finger DNA-binding family protein (Glyma16g02550) gene, partial cds.
GenBankKF2209405e-57KF220940.1 Glycine soja cultivar IT162825 clone 2f2r Dof-type zinc finger DNA-binding family protein (Glyma16g02550) gene, partial cds.
GenBankKF2209415e-57KF220941.1 Glycine soja cultivar IT178480 clone 2f2r Dof-type zinc finger DNA-binding family protein (Glyma16g02550) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016181667.10.0dof zinc finger protein DOF2.5 isoform X1
RefseqXP_016181673.10.0dof zinc finger protein DOF2.5 isoform X1
RefseqXP_020970898.10.0dof zinc finger protein DOF2.5 isoform X1
RefseqXP_025631732.10.0dof zinc finger protein DOF2.5 isoform X1
TrEMBLA0A445C1S21e-165A0A445C1S2_ARAHY; Uncharacterized protein
STRINGXP_007135275.13e-82(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF67434137
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61850.41e-38Dof family protein