PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.T3WCA
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family NF-YA
Protein Properties Length: 224aa    MW: 24627.8 Da    PI: 10.01
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.T3WCAgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA105.45e-3375131158
    CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                  d p+YVNaKQy++Il+RRq+Rakle+++kl +k+rkpylheSRh+hAl+R RgsgGrF
  Araip.T3WCA  75 DGPIYVNAKQYHGILRRRQSRAKLEAQNKL-IKNRKPYLHESRHRHALKRVRGSGGRF 131
                  57****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005211.0E-3673134IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115237.33874134IPR001289Nuclear transcription factor Y subunit A
PfamPF020455.0E-2877131IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006166.0E-257799IPR001289Nuclear transcription factor Y subunit A
PROSITE patternPS0068607999IPR018362CCAAT-binding factor, conserved site
PRINTSPR006166.0E-25108131IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0016602Cellular ComponentCCAAT-binding factor complex
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MKPFLLLNHP DPVFNFEQVN STHSMAHAPF PYSEPFFGGS LVAYGPQAVG QPQMLPQVLG  60
LGSPRIALPL DLAEDGPIYV NAKQYHGILR RRQSRAKLEA QNKLIKNRKP YLHESRHRHA  120
LKRVRGSGGR FLSAKQLQLS NSELINSARS GLNPVNVYHK KDASEVESHL SRTGENASSI  180
TTCSDLTSFS SNDINFRHPE HNFLGSSPNM GGASQCSGGH TFGC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A9e-2375136263NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1115124RHRHALKRVR
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.T3WCA
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKC3557900.0KC355790.1 Arachis hypogaea clone Contig9308 nuclear transcription factor Y subunit A-3 (NF-YA3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016202628.11e-165nuclear transcription factor Y subunit A-3
RefseqXP_025630903.11e-165nuclear transcription factor Y subunit A-3
TrEMBLM4SZZ41e-164M4SZZ4_ARAHY; Nuclear transcription factor Y subunit A-3
STRINGXP_007154608.11e-116(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF69493149
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G72830.13e-47nuclear factor Y, subunit A3