PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.T513R
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family FAR1
Protein Properties Length: 319aa    MW: 37485.3 Da    PI: 5.1404
Description FAR1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.T513RgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FAR135.92.5e-1189147159
         FAR1   1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetr 59 
                  +fYn+YAk+ GFs rk++++ks r g  + r+fvC +eg+r +++    + +r++++etr
  Araip.T513R  89 EFYNRYAKTRGFSARKNRTRKS-RAGALKLRNFVCHREGFRPPNNYGiGNLKRKPTPETR 147
                  6*******************99.7777**************9988765455666666655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF031012.8E-889146IPR004330FAR1 DNA binding domain
PROSITE profilePS5096610.027229277IPR007527Zinc finger, SWIM-type
SMARTSM005750.0017252279IPR006564Zinc finger, PMZ-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MGQEFSHEGV NSEHTSYDQY EQEKEKYEEV DVDYMDEDDT NVEPMFDYHG FDEGYNIDSL  60
EDIGMIEFWN TRDEDVCHFH FSDVDIAFEF YNRYAKTRGF SARKNRTRKS RAGALKLRNF  120
VCHREGFRPP NNYGIGNLKR KPTPETRYNL VEFIQHFNRC VDHIRWKEVQ ADLASVNGRP  180
IMQTCFQQLE RSAANIYTLS IFHMFQPILV RAASMKVINM RQTGSYVIYS IGLDQTPNEM  240
WRVFCCDIEM EFNCSCMRME SFGIPCEHIV CVLVHEDIEE LPRSLVLPRW TKTAKVGLQN  300
AVGLHWDSLM LSQYGCLMD
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.T513R
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016189092.11e-125protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_016189094.11e-125protein FAR1-RELATED SEQUENCE 5-like
RefseqXP_020974546.11e-125protein FAR1-RELATED SEQUENCE 5-like
TrEMBLA0A444XLU51e-118A0A444XLU5_ARAHY; Uncharacterized protein
TrEMBLA0A444YRT31e-118A0A444YRT3_ARAHY; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF1401926
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27110.26e-18FAR1-related sequence 3