PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.T8DVZ
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family C2H2
Protein Properties Length: 234aa    MW: 26330.2 Da    PI: 9.1038
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.T8DVZgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H216.32.9e-05208231123
                  EEETTTTEEESSHHHHHHHHHH.T CS
      zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                  y C+dC++ F++ + L++H +  H
  Araip.T8DVZ 208 YGCKDCNRLFKTEDALNSHNKAkH 231
                  67*****************88766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015711.365208234IPR007087Zinc finger, C2H2
PfamPF139123.9E-6208232IPR007087Zinc finger, C2H2
PROSITE patternPS000280210231IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009651Biological Processresponse to salt stress
GO:0009737Biological Processresponse to abscisic acid
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005730Cellular Componentnucleolus
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MGVSSLLDIK LNLLWNLKMK KTLKSSKIFQ LLLPMVRNSE LEVKNAVKLD ANEAKQKEKI  60
GDPRKKEKAN EKDANGEDEE DSFDADSDES DEDSSEDEVF LTHTKRMDHD AHVCLILLLS  120
DVANLIVWHQ RVPLMIPVVA ELSKKRVHES SKKTPVPEKK AKFVTPEKID NKGGVHVATP  180
YPTKQAIKAA ANNRQLVKQQ TPKLVGDYGC KDCNRLFKTE DALNSHNKAK HSAK
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15465KQKEKIGDPRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.T8DVZ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016208109.11e-85histone deacetylase HDT1 isoform X3
RefseqXP_025657800.11e-85histone deacetylase HDT1 isoform X2
TrEMBLA0A444YPC61e-101A0A444YPC6_ARAHY; Uncharacterized protein
STRINGXP_004494141.12e-40(Cicer arietinum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF10253067
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G03740.11e-21histone deacetylase 2C