PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.TDI8T

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 508aa MW: 58335.6 Da PI: 9.6421

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.TDI8T	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	30.4	1.3e-09	99	155	1	62
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgC 62 kfY++YAk +GFs+r+++++k+ +ei+++ +Cs+egk +++ + +++t+++ + C Araip.TDI8T 99 KFYKDYAKAAGFSTRVRSTNKK--GNEIKNQLITCSREGKWKSKISP---TEKTNPTAGCWC 155 6**************98887..8889**********9998877...555555555555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.1E-6	99	155	IPR004330	FAR1 DNA binding domain
PROSITE profile	PS50966	9.025	304	340	IPR007527	Zinc finger, SWIM-type
Pfam	PF04434	2.5E-4	306	337	IPR007527	Zinc finger, SWIM-type
SMART	SM00575	0.0017	315	342	IPR006564	Zinc finger, PMZ-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0008270	Molecular Function	zinc ion binding

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence Send to blast
MLFVIVLFKS FGINMFNDKI HKNLFRYKIA YKDGLCLFHS IWPLQTSIRP KQYGSYMNNR 60 LSCCRWGVDK EYLGPLCDVD DQFVSKVGMT FNTLEDAAKF YKDYAKAAGF STRVRSTNKK 120 GNEIKNQLIT CSREGKWKSK ISPTEKTNPT AGCWCLNHFG GRVASFTSLL SNSSRVAQTV 180 HETKHVVRRT IENNEKADCH IWVPIYLDYH FWAGMRSTQR SESISRGQSE RESNAADFHT 240 VIPSVIKSSI EAQFQHVYTH QKFREVQAQF RGKANCITRL TNSALGYLVY EVGEQVSSSI 300 FNKFVVTYDS LAAQVKCQCL LFKSRGILCR HALSVLSFER VTQVSSRYIL ERWRKKVKRR 360 HTHIKSSHDE PLLEPRSKRF DELVFCLQNI CEFASESEEM TAILHRAYDN VMVEMEELKA 420 KRKGTCSLSH EDANLESVNE LQSSPRARFK VGQIANASKK KKTKALNELN LFDAASVMQP 480 HSSQYDGHVM NYQFRKLAAE DSFLDSAI

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence Send to blast

MLFVIVLFKS FGINMFNDKI HKNLFRYKIA YKDGLCLFHS IWPLQTSIRP KQYGSYMNNR  60
LSCCRWGVDK EYLGPLCDVD DQFVSKVGMT FNTLEDAAKF YKDYAKAAGF STRVRSTNKK  120
GNEIKNQLIT CSREGKWKSK ISPTEKTNPT AGCWCLNHFG GRVASFTSLL SNSSRVAQTV  180
HETKHVVRRT IENNEKADCH IWVPIYLDYH FWAGMRSTQR SESISRGQSE RESNAADFHT  240
VIPSVIKSSI EAQFQHVYTH QKFREVQAQF RGKANCITRL TNSALGYLVY EVGEQVSSSI  300
FNKFVVTYDS LAAQVKCQCL LFKSRGILCR HALSVLSFER VTQVSSRYIL ERWRKKVKRR  360
HTHIKSSHDE PLLEPRSKRF DELVFCLQNI CEFASESEEM TAILHRAYDN VMVEMEELKA  420
KRKGTCSLSH EDANLESVNE LQSSPRARFK VGQIANASKK KKTKALNELN LFDAASVMQP  480
HSSQYDGHVM NYQFRKLAAE DSFLDSAI

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.TDI8T

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_015954109.1	1e-163	protein FAR-RED ELONGATED HYPOCOTYL 3-like
TrEMBL	A0A445A850	0.0	A0A445A850_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	4e-17	far-red elongated hypocotyls 3