PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.TGK8R

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 159aa MW: 18807.6 Da PI: 4.7449

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.TGK8R	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	50.8	5.4e-16	78	149	1	73
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkk.tekerrtraetrtgCkaklkvkkekd 73 +fY++YAk GF r+s+++k+ + ++++fvC ++g+r+++ + ++++r+raetr+gC a++ ++++++ Araip.TGK8R 78 EFYQQYAKYHGFGARRSRNEKR--GEVRIRQEFVCHRQGYRSSKFYSmPNRQKRPRAETRCGCPARMLLRMDDE 149 6**************98887..77889*********998876789999************999874 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-13	78	148	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 159 aa Download sequence Send to blast
MESDEYDFQE DETQHDHHAE ADVDNGDADD AGGMSDNYAE DEFYAVDSVE WIGWIDFLNL 60 SKEDVLRFNF ADVDIAFEFY QQYAKYHGFG ARRSRNEKRG EVRIRQEFVC HRQGYRSSKF 120 YSMPNRQKRP RAETRCGCPA RMLLRMDDES GRCVLFRRA

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.TGK8R

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016199879.1	1e-95	protein FAR1-RELATED SEQUENCE 5-like
Refseq	XP_025652823.1	1e-95	protein FAR1-RELATED SEQUENCE 5-like
TrEMBL	A0A445ADJ3	3e-92	A0A445ADJ3_ARAHY; Uncharacterized protein
TrEMBL	A0A445D5K6	2e-92	A0A445D5K6_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF16612	2	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G10240.1	5e-10	FAR1-related sequence 11