PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.TI8CB

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

SRS

Protein Properties

Length: 382aa MW: 42154.9 Da PI: 5.9263

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.TI8CB	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	26.5	1.9e-08	51	131	3	82
DUF702 3 sgtasCqdCGnqakkdCaheRCRtCCksrgfdCathv..kstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskk 82 +++ +C++CGn a+ C +e C+ CC + C+ hv st +p + ++ + +++s + ++s+++++ + r+l s++ Araip.TI8CB 51 QNKPKCKQCGNVARSRCPFESCKSCCSRNQNPCHIHVlkTSTTLPDKAPSSSAAPIEQQSVEPSQSSTASRVASLRQL-SNS 131 56679********************************54477888777776665555555555555555555555554.333 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	9.3E-5	55	128	IPR007818	Protein of unknown function DUF702

Sequence ? help Back to Top
Protein Sequence Length: 382 aa Download sequence Send to blast
KPEIRVVPSN RNSNNEVRQA MAALSPAPNN NNQKAVSLSG GANPPKSQRG QNKPKCKQCG 60 NVARSRCPFE SCKSCCSRNQ NPCHIHVLKT STTLPDKAPS SSAAPIEQQS VEPSQSSTAS 120 RVASLRQLSN SFAQFNNLNI SFRSRKPLTR KDAAAINEWR FSKLKEYKER NIELENETFD 180 RYMQNIDLLE EVLAVKSMED NVSSESESNT SSMEAYNDLM ITKLKLQIRS NSVGSDAARM 240 RMQQIVDRGL KKLKMSAVSG AATEALSEDP NNTSGAAKSL RTERLSAISD LIDKINKARS 300 EEDLKSCLEI KSQLFNLDGG SSIVDPQPQD NETDGKEIDQ GDSTSGEELE YSLPKLVGTT 360 DIDQETLNTI DNHFSSLEYL EL

Sequence ? help Back to Top

Protein Sequence Length: 382 aa Download sequence Send to blast

KPEIRVVPSN RNSNNEVRQA MAALSPAPNN NNQKAVSLSG GANPPKSQRG QNKPKCKQCG  60
NVARSRCPFE SCKSCCSRNQ NPCHIHVLKT STTLPDKAPS SSAAPIEQQS VEPSQSSTAS  120
RVASLRQLSN SFAQFNNLNI SFRSRKPLTR KDAAAINEWR FSKLKEYKER NIELENETFD  180
RYMQNIDLLE EVLAVKSMED NVSSESESNT SSMEAYNDLM ITKLKLQIRS NSVGSDAARM  240
RMQQIVDRGL KKLKMSAVSG AATEALSEDP NNTSGAAKSL RTERLSAISD LIDKINKARS  300
EEDLKSCLEI KSQLFNLDGG SSIVDPQPQD NETDGKEIDQ GDSTSGEELE YSLPKLVGTT  360
DIDQETLNTI DNHFSSLEYL EL

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.TI8CB

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016201512.1	0.0	uncharacterized protein LOC107642617 isoform X2
TrEMBL	A0A444WUF3	0.0	A0A444WUF3_ARAHY; Uncharacterized protein
STRING	XP_004508981.1	1e-165	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF7690	16	18

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G32730.1	4e-88