PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.TJ9SW
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family M-type_MADS
Protein Properties Length: 256aa    MW: 28620 Da    PI: 11.0761
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.TJ9SWgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF93.87.7e-30204253150
                  S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
       SRF-TF   1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 
                  krien++nrqvtf+k rng+lKKA+ELSvLCdaeva+i+fss+g+lyey+
  Araip.TJ9SW 204 KRIENTTNRQVTFCKHRNGLLKKAYELSVLCDAEVALIVFSSRGRLYEYA 253
                  79***********************************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF075762.7E-6129169IPR011422BRCA1-associated 2
PROSITE profilePS5006633.011196256IPR002100Transcription factor, MADS-box
SMARTSM004328.0E-40196255IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-28197255IPR002100Transcription factor, MADS-box
CDDcd002653.39E-37197255No hitNo description
PRINTSPR004044.6E-32198218IPR002100Transcription factor, MADS-box
PfamPF003192.8E-25205252IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-32218233IPR002100Transcription factor, MADS-box
PRINTSPR004044.6E-32233254IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 256 aa     Download sequence    Send to blast
MLLISFIIQN PFSLQRTQKA RTLKASKNPS PHPSTPSSLS LLALPPSLLL RRWFSLVVTP  60
SSHTVRRKLS VASLSGGDFL RVHSVDSEQP LDPESIFSEN DEDSSPKFRG RRGVLHLFRS  120
SSHSSIPSPS SGSSLVFILT VPNHLSFDDL IRWCGPHLHH LHRLLFIRVG IGEIKKMAFP  180
GANESMSGAS SPQRKMGRGK IEIKRIENTT NRQVTFCKHR NGLLKKAYEL SVLCDAEVAL  240
IVFSSRGRLY EYANNR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1tqe_P8e-20196253158Myocyte-specific enhancer factor 2B
1tqe_Q8e-20196253158Myocyte-specific enhancer factor 2B
1tqe_R8e-20196253158Myocyte-specific enhancer factor 2B
1tqe_S8e-20196253158Myocyte-specific enhancer factor 2B
6c9l_A8e-20196253158Myocyte-specific enhancer factor 2B
6c9l_B8e-20196253158Myocyte-specific enhancer factor 2B
6c9l_C8e-20196253158Myocyte-specific enhancer factor 2B
6c9l_D8e-20196253158Myocyte-specific enhancer factor 2B
6c9l_E8e-20196253158Myocyte-specific enhancer factor 2B
6c9l_F8e-20196253158Myocyte-specific enhancer factor 2B
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.TJ9SW
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY3828333e-58AY382833.1 Glycine max MADS-box protein mRNA, complete cds.
GenBankKT7605793e-58KT760579.1 Thermopsis turcica floral homeotic protein AGAMOUS mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020969327.10.0uncharacterized protein LOC107624459 isoform X2
RefseqXP_025685539.10.0uncharacterized protein LOC112786367
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18960.16e-39MIKC_MADS family protein