PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.TLB1K
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family LBD
Protein Properties Length: 155aa    MW: 17021.4 Da    PI: 8.1452
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.TLB1KgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26091.41.1e-282102195
       DUF260   1 aCaaCkvlrrkCakdCvlapyf......paeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlka 92 
                  +C++C+vlr++C+++C+l+ ++      p +q  ++ +v+k+FG++n++++l+++p+++r+++++sl+yeA  r+ +Pv+Gavg++++++++l+q+++
  Araip.TLB1K   2 SCNGCRVLRKGCSEECMLRHCLvwiqdnPPAQGYATLFVAKFFGRANLMSFLSSVPTNHRSALFQSLLYEAVGRTINPVSGAVGLLSTGNWHLCQSAV 99 
                  6************************99999999**************************************************************998 PP

       DUF260  93 ela 95 
                  + +
  Araip.TLB1K 100 DKV 102
                  765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.531108IPR004883Lateral organ boundaries, LOB
PfamPF031953.2E-25299IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MSCNGCRVLR KGCSEECMLR HCLVWIQDNP PAQGYATLFV AKFFGRANLM SFLSSVPTNH  60
RSALFQSLLY EAVGRTINPV SGAVGLLSTG NWHLCQSAVD KVLRGGGAAL MESSDHLKEA  120
ESQERIEKGQ PPSNTTTTHH WPSQTTETKL LTLFL
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.TLB1K
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016174139.11e-113LOB domain-containing protein 38 isoform X1
RefseqXP_025676663.11e-113LOB domain-containing protein 38 isoform X1
SwissprotQ9SN233e-51LBD38_ARATH; LOB domain-containing protein 38
TrEMBLA0A445BF481e-106A0A445BF48_ARAHY; Uncharacterized protein
STRINGGLYMA20G26910.16e-61(Glycine max)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF72134136
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G49940.12e-53LOB domain-containing protein 38