PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.TSF8M

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

FAR1

Protein Properties

Length: 497aa MW: 56759.1 Da PI: 8.3987

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.TSF8M	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	52.7	1.4e-16	66	152	1	91
FAR1 1 kfYneYAkevGFsvrkskskkskrngeitkrtfvCskegkreeekkktekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 kfY++YAk + Fs+r+++++++ ++ei+++ +Cs+egk +++ + +++ +++ +C a++ ++ k g w ++k++l+H+H+++p Araip.TSF8M 66 KFYRNYAKAADFSTRVRSTNRK--ENEIKNQLITCSREGKWKSKISP---TEKMNPTAGLNCPARIYIHTLKdVGAWIISKVVLDHSHPCCP 152 6**************98887..7779*********999877...8899999*******998879*************986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	1.2E-13	66	152	IPR004330	FAR1 DNA binding domain

Sequence ? help Back to Top
Protein Sequence Length: 497 aa Download sequence Send to blast
MDDSTSDCQL NQGEVDYEFE SNEVPDLLSF GSGVLYQQWL GPLSVVNDQF VPKVGMTFTT 60 LEDAGKFYRN YAKAADFSTR VRSTNRKENE IKNQLITCSR EGKWKSKISP TEKMNPTAGL 120 NCPARIYIHT LKDVGAWIIS KVVLDHSHPC CPSKAEMLKQ HRELSMSIRR TIENNEEADL 180 YEDCHIWVPI YLDHHFWAGM RSTQRSESMH SFFNKEQVER ESDAADFHTV IPCATKSSIE 240 AQFQDVYTHQ KFRKVQAQFR GKANCITRLT NSALGYSVYE VGEQVSSSIF QKFVVTYDSV 300 AAESRGIVCR HALSVLSFEQ VSQVSPRYIL ERWSKKVKRR HTHVKSSHDE PLLEPRSKRF 360 DQLVFHLQNI CEFASESEEL TAIMHRAYDN VMVEMESLKA KRKGTSSLSH EDANLESVNE 420 LQSPPRIRTR GHPKNRLGSK LDKQIANATK KKKTKALNEL NLFDAASVVH SNSSQYQARV 480 MNYQFRVPAA VDNSLGV

Sequence ? help Back to Top

Protein Sequence Length: 497 aa Download sequence Send to blast

MDDSTSDCQL NQGEVDYEFE SNEVPDLLSF GSGVLYQQWL GPLSVVNDQF VPKVGMTFTT  60
LEDAGKFYRN YAKAADFSTR VRSTNRKENE IKNQLITCSR EGKWKSKISP TEKMNPTAGL  120
NCPARIYIHT LKDVGAWIIS KVVLDHSHPC CPSKAEMLKQ HRELSMSIRR TIENNEEADL  180
YEDCHIWVPI YLDHHFWAGM RSTQRSESMH SFFNKEQVER ESDAADFHTV IPCATKSSIE  240
AQFQDVYTHQ KFRKVQAQFR GKANCITRLT NSALGYSVYE VGEQVSSSIF QKFVVTYDSV  300
AAESRGIVCR HALSVLSFEQ VSQVSPRYIL ERWSKKVKRR HTHVKSSHDE PLLEPRSKRF  360
DQLVFHLQNI CEFASESEEL TAIMHRAYDN VMVEMESLKA KRKGTSSLSH EDANLESVNE  420
LQSPPRIRTR GHPKNRLGSK LDKQIANATK KKKTKALNEL NLFDAASVVH SNSSQYQARV  480
MNYQFRVPAA VDNSLGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.TSF8M

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	HQ637178	0.0	HQ637178.1 Arachis hypogaea clone AHF-205D04 NBS-LRR gene cluster, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020997233.1	0.0	protein FAR-RED IMPAIRED RESPONSE 1-like
TrEMBL	A0A445A850	0.0	A0A445A850_ARAHY; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF21	14	477

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22170.2	3e-18	far-red elongated hypocotyls 3