PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.TSY02
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family MYB
Protein Properties Length: 321aa    MW: 36129.6 Da    PI: 6.6221
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.TSY02genomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding60.53.6e-191562148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     rg+WT+eEd++lv++++++G+g+W++ ++  g+ R++k+c++rw +yl
      Araip.TSY02 15 RGPWTPEEDLKLVHYIQKHGPGNWRSLPKNAGLQRCGKSCRLRWTNYL 62
                     89********************************************97 PP
2Myb_DNA-binding51.91.7e-1668112147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rgr++ eE+e +++++  +G++ W++Ia++++ gRt++++k++w+++
      Araip.TSY02  68 RGRFSFEEEETIIQLHSFMGNK-WSAIAARLP-GRTDNEIKNYWNTH 112
                      89********************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.1E-25765IPR009057Homeodomain-like
PROSITE profilePS5129426.4651066IPR017930Myb domain
SuperFamilySSF466891.24E-3112109IPR009057Homeodomain-like
SMARTSM007177.4E-151464IPR001005SANT/Myb domain
PfamPF002491.0E-171562IPR001005SANT/Myb domain
CDDcd001676.65E-131762No hitNo description
Gene3DG3DSA:1.10.10.602.1E-2666117IPR009057Homeodomain-like
PROSITE profilePS5129419.06267117IPR017930Myb domain
SMARTSM007174.8E-1667115IPR001005SANT/Myb domain
PfamPF002496.2E-1568112IPR001005SANT/Myb domain
CDDcd001671.05E-1170113No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 321 aa     Download sequence    Send to blast
MGRVPCCDKN NGLKRGPWTP EEDLKLVHYI QKHGPGNWRS LPKNAGLQRC GKSCRLRWTN  60
YLRPDIKRGR FSFEEEETII QLHSFMGNKW SAIAARLPGR TDNEIKNYWN THIRKRLLRM  120
GIDPVTHAPR LDLLDMSSVL RSALGNPSSI LNLQGLLVNP ELLKLVATAS LLSHQTQNLP  180
QLINAGANSD SQQLLNHQFQ IPNQTTNVID LVSNNNCNAM NNSFATTPSS YLGENLNVSQ  240
QNQVDLLENE LLQYINNGSS DQNMGYESVM STPLSTPTTT PLTSSSTYVN SSNTEQEERD  300
TYCSELFKLE IPESLDINDF L
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A1e-29131172105MYB PROTO-ONCOGENE PROTEIN
1mse_C8e-30131172105C-Myb DNA-Binding Domain
1msf_C8e-30131172105C-Myb DNA-Binding Domain
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that may function in osmotic stress and wounding signaling pathways (Probable). Contributes to basal resistance against the herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:19517001, ECO:0000305|PubMed:12857823}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.TSY02
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by light (PubMed:8980549). Induced by wounding, salt stress and abscisic acid (PubMed:12857823). Induced by the lepidopteran herbivore Pieris rapae (white cabbage butterfly) feeding (PubMed:19517001). {ECO:0000269|PubMed:12857823, ECO:0000269|PubMed:19517001, ECO:0000269|PubMed:8980549}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016172073.10.0transcription factor MYB102-like
RefseqXP_025674087.10.0transcription factor MYB102
SwissprotQ9LDR81e-101MY102_ARATH; Transcription factor MYB102
TrEMBLA0A444Y6F80.0A0A444Y6F8_ARAHY; Uncharacterized protein
STRINGXP_007149908.11e-142(Phaseolus vulgaris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF85034127
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21440.11e-99MYB-like 102
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Huang KC,Lin WC,Cheng WH
    Salt hypersensitive mutant 9, a nucleolar APUM23 protein, is essential for salt sensitivity in association with the ABA signaling pathway in Arabidopsis.
    BMC Plant Biol., 2018. 18(1): p. 40
    [PMID:29490615]
  4. Zhu L,Guo J,Ma Z,Wang J,Zhou C
    Arabidopsis Transcription Factor MYB102 Increases Plant Susceptibility to Aphids by Substantial Activation of Ethylene Biosynthesis.
    Biomolecules, 2019.
    [PMID:29880735]