PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.TUB1K

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

MYB

Protein Properties

Length: 1058aa MW: 118872 Da PI: 5.4077

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.TUB1K	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	43	1.1e-13	117	162	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 g W Ede+l+ av ++G+++W++I++ + ++++kqck rw+ +l Araip.TUB1K 117 GVWKNTEDEILKAAVMKYGKNQWARISSLLV-RKSAKQCKARWYEWL 162 78***************************.**********986 PP
2	Myb_DNA-binding	32.7	1.8e-10	169	212	2	48
SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 WT eEde+l+++ k++++ W+tIa +g Rt+ qc +r+ k+l Araip.TUB1K 169 TEWTREEDEKLLHLAKLMPTQ-WRTIAPIVG--RTPSQCLERYEKLL 212 68***************99.****8..********9986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	22.008	111	166	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	5.8E-18	114	165	IPR009057	Homeodomain-like
SMART	SM00717	7.0E-15	115	164	IPR001005	SANT/Myb domain
Pfam	PF13921	4.6E-13	119	179	No hit	No description
CDD	cd00167	8.60E-12	119	162	No hit	No description
SuperFamily	SSF46689	1.4E-20	142	215	IPR009057	Homeodomain-like
CDD	cd11659	1.65E-30	164	215	No hit	No description
Gene3D	G3DSA:1.10.10.60	3.5E-14	166	213	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-12	167	214	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	16.443	167	216	IPR017930	Myb domain
Pfam	PF11831	3.8E-56	515	761	IPR021786	Pre-mRNA splicing factor component Cdc5p/Cef1

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009870	Biological Process	defense response signaling pathway, resistance gene-dependent
GO:0010204	Biological Process	defense response signaling pathway, resistance gene-independent
GO:0042742	Biological Process	defense response to bacterium
GO:0050832	Biological Process	defense response to fungus
GO:0009507	Cellular Component	chloroplast
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1058 aa Download sequence Send to blast
MASPREPNDS HHRRYPSLVE SAVAADTLLL GWRCGTDRPV TIVPLLLFSL PSSSLFSSQS 60 PSPSSSLFSL PSPSISLFSS PSPSSSLSVA VELAVCFLSV SLSLESGGKM RIMIKGGVWK 120 NTEDEILKAA VMKYGKNQWA RISSLLVRKS AKQCKARWYE WLDPSIKKTE WTREEDEKLL 180 HLAKLMPTQW RTIAPIVGRT PSQCLERYEK LLDAACVKDE NYEPGDDPRK LRPGEIDPNP 240 ESKPARPDPV DMDEDEKEML SEARARLANT KGKKAKRKAR EKQLEEARRL ASLQKKRELK 300 AAGIDVRHRR RKRKGIDYNA EIPFEKRPPP GFFDIADEDR PVEQPQFPTT IEELEGKRRI 360 DVETQLRKQD IAKNKIAQRQ DAPSAILHAN KLNDPETVRK QTKLMLPPPQ ISDQELDEIA 420 RMGYANDLAG SDEFGEGSAA TRALLANYAQ TPGRGMTPLR IPQRSPASKG DAVMMEAENL 480 ARLRESQTPL LGGENPELHP SDFTGVTPKR KEVQTPNPML TPSATPGVAG LTPRIGMTPA 540 RDGYASMTPK GTPLRDELHI NEDVDMHERA KLELQRAEIR RSLRSGLGSL PQPKNEYQIV 600 MQPIPEDAEE PEEKIEEDMS DRIAREMAEE EARQQALLRK RSKVLQRELP RPPAASLELI 660 RNSLIRADGD KSSFVPPTSI EQADEMIRRE LLALLEHDNA KYPLDEKVNK EKKKGAKRVV 720 NEPVVPVIEE FHEEEMKDAD KLIKDEAHYL RVALGHESEP LEEFIEAHRT GLNDLMFFPT 780 RNAYGLSSVA GNMEKLAALQ NEFENVRKKF DDGKEKVVKL EKKAILLTQG YEAFRNAFCY 840 ARGYLHPIGV DKILEMRAKN SLWPQIEATS KQMDIAATEL ECFEALQKQE KLAASHRINN 900 LWEEVQKQKE LERTLQYKYG NLMEEVERIQ NVMEQYRVQA QKQEEIEANN RAHESTETVA 960 DKTGAQDSES FKAAPLTEEN ETAIATALSH DESEAGTVQD QTTASQKNDV DVDSDDIKQT 1020 EDPNAIPPDA ALAAKDDAGK VEGTITDGHI DNCKAALD

Sequence ? help Back to Top

Protein Sequence Length: 1058 aa Download sequence Send to blast

MASPREPNDS HHRRYPSLVE SAVAADTLLL GWRCGTDRPV TIVPLLLFSL PSSSLFSSQS  60
PSPSSSLFSL PSPSISLFSS PSPSSSLSVA VELAVCFLSV SLSLESGGKM RIMIKGGVWK  120
NTEDEILKAA VMKYGKNQWA RISSLLVRKS AKQCKARWYE WLDPSIKKTE WTREEDEKLL  180
HLAKLMPTQW RTIAPIVGRT PSQCLERYEK LLDAACVKDE NYEPGDDPRK LRPGEIDPNP  240
ESKPARPDPV DMDEDEKEML SEARARLANT KGKKAKRKAR EKQLEEARRL ASLQKKRELK  300
AAGIDVRHRR RKRKGIDYNA EIPFEKRPPP GFFDIADEDR PVEQPQFPTT IEELEGKRRI  360
DVETQLRKQD IAKNKIAQRQ DAPSAILHAN KLNDPETVRK QTKLMLPPPQ ISDQELDEIA  420
RMGYANDLAG SDEFGEGSAA TRALLANYAQ TPGRGMTPLR IPQRSPASKG DAVMMEAENL  480
ARLRESQTPL LGGENPELHP SDFTGVTPKR KEVQTPNPML TPSATPGVAG LTPRIGMTPA  540
RDGYASMTPK GTPLRDELHI NEDVDMHERA KLELQRAEIR RSLRSGLGSL PQPKNEYQIV  600
MQPIPEDAEE PEEKIEEDMS DRIAREMAEE EARQQALLRK RSKVLQRELP RPPAASLELI  660
RNSLIRADGD KSSFVPPTSI EQADEMIRRE LLALLEHDNA KYPLDEKVNK EKKKGAKRVV  720
NEPVVPVIEE FHEEEMKDAD KLIKDEAHYL RVALGHESEP LEEFIEAHRT GLNDLMFFPT  780
RNAYGLSSVA GNMEKLAALQ NEFENVRKKF DDGKEKVVKL EKKAILLTQG YEAFRNAFCY  840
ARGYLHPIGV DKILEMRAKN SLWPQIEATS KQMDIAATEL ECFEALQKQE KLAASHRINN  900
LWEEVQKQKE LERTLQYKYG NLMEEVERIQ NVMEQYRVQA QKQEEIEANN RAHESTETVA  960
DKTGAQDSES FKAAPLTEEN ETAIATALSH DESEAGTVQD QTTASQKNDV DVDSDDIKQT  1020
EDPNAIPPDA ALAAKDDAGK VEGTITDGHI DNCKAALD

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5mqf_L	0.0	111	931	3	800	Cell division cycle 5-like protein
5xjc_L	0.0	111	931	3	800	Cell division cycle 5-like protein
5yzg_L	0.0	111	931	3	800	Cell division cycle 5-like protein
5z56_L	0.0	111	931	3	800	Cell division cycle 5-like protein
5z57_L	0.0	111	931	3	800	Cell division cycle 5-like protein
5z58_L	0.0	111	931	3	800	Cell division cycle 5-like protein
6ff4_L	0.0	111	931	3	800	Cell division cycle 5-like protein
6ff7_L	0.0	111	931	3	800	Cell division cycle 5-like protein
6icz_L	0.0	111	931	3	800	Cell division cycle 5-like protein
6id0_L	0.0	111	931	3	800	Cell division cycle 5-like protein
6id1_L	0.0	111	931	3	800	Cell division cycle 5-like protein
6qdv_O	0.0	111	931	3	800	Cell division cycle 5-like protein
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	294	313	KKRELKAAGIDVRHRRRKRK

Functional Description ? help Back to Top
Source	Description
UniProt	Component of the MAC complex that probably regulates defense responses through transcriptional control and thereby is essential for plant innate immunity. Possesses a sequence specific DNA sequence 'CTCAGCG' binding activity. Involved in mRNA splicing and cell cycle control. May also play a role in the response to DNA damage. {ECO:0000250\|UniProtKB:Q99459, ECO:0000269\|PubMed:17298883, ECO:0000269\|PubMed:17575050, ECO:0000269\|PubMed:8917598}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00028	SELEX	Transfer from AT1G09770	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.TUB1K

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016184908.1	0.0	cell division cycle 5-like protein isoform X1
Swissprot	P92948	0.0	CDC5L_ARATH; Cell division cycle 5-like protein
TrEMBL	A0A445E775	0.0	A0A445E775_ARAHY; Uncharacterized protein
STRING	GLYMA10G30870.1	0.0	(Glycine max)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF4072	33	54

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09770.1	0.0	cell division cycle 5

Publications ? help Back to Top
Heyndrickx KS,Vandepoele K Systematic identification of functional plant modules through the integration of complementary data sources. Plant Physiol., 2012. 159(3): p. 884-901 [PMID:22589469] Li S, et al. MAC3A and MAC3B, Two Core Subunits of the MOS4-Associated Complex, Positively Influence miRNA Biogenesis. Plant Cell, 2018. 30(2): p. 481-494 [PMID:29437988]