PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Araip.TXC1J
Organism
Arachis ipaensis
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis
Family HB-other
Protein Properties Length: 154aa    MW: 17465.4 Da    PI: 6.9109
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Araip.TXC1JgenomeNCGR_PGCView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox63.82.4e-203085156
                 TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
     Homeobox  1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                 rr  +++t++q+  Lee+F+ + +p+ ++r++L ++lgL+ rqVk+WFqNrR++ k
  Araip.TXC1J 30 RRFYHRHTPHQIAKLEEAFNACAHPNDSMRRQLGTELGLEPRQVKFWFQNRRTQAK 85
                 5777899**********************************************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466893.01E-191086IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.5E-201687IPR009057Homeodomain-like
PROSITE profilePS5007116.2932787IPR001356Homeobox domain
SMARTSM003891.3E-172991IPR001356Homeobox domain
PfamPF000467.1E-183085IPR001356Homeobox domain
CDDcd000867.51E-163087No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 154 aa     Download sequence    Send to blast
MASPMGSSST AGGATDGTDD EGQNRPQNSR RFYHRHTPHQ IAKLEEAFNA CAHPNDSMRR  60
QLGTELGLEP RQVKFWFQNR RTQAKAQADR SNNCALRREN ERMMAENLMF RESLKNVVCV  120
TCGGPTVTED DCQIRLEQFK LENDFLVQEA STSN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapAraip.TXC1J
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020973143.11e-113homeobox-leucine zipper protein ROC3-like
RefseqXP_025640949.11e-114homeobox-leucine zipper protein ROC8-like
SwissprotQ69T583e-41ROC8_ORYSJ; Homeobox-leucine zipper protein ROC8
TrEMBLA0A444ZSS12e-90A0A444ZSS1_ARAHY; Uncharacterized protein
STRINGXP_008348615.13e-43(Malus domestica)
STRINGXP_008358175.13e-43(Malus domestica)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF2115934
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17920.12e-32homeodomain GLABROUS 12