PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.U4ZBC

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

G2-like

Protein Properties

Length: 256aa MW: 27847.2 Da PI: 9.2851

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.U4ZBC	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	105.9	2.3e-33	48	102	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+rlrWt++LH+rFv+a++qLGG+++AtPk +l++m+v+gLt++hvkSHLQkYRl Araip.U4ZBC 48 KQRLRWTSDLHDRFVDAITQLGGPDRATPKGVLRVMGVPGLTIYHVKSHLQKYRL 102 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	12.008	45	105	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	4.6E-32	47	103	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	3.9E-26	48	103	IPR006447	Myb domain, plants
SuperFamily	SSF46689	3.4E-17	48	102	IPR009057	Homeodomain-like
Pfam	PF00249	1.3E-7	50	101	IPR001005	SANT/Myb domain
Pfam	PF14379	5.8E-24	137	182	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 256 aa Download sequence Send to blast
MYHAKKFSSA TMVPHKPQGG GEQVGNVGVL DGSAVRNAGP ASSGGNGKQR LRWTSDLHDR 60 FVDAITQLGG PDRATPKGVL RVMGVPGLTI YHVKSHLQKY RLAKYLPDSP ADGKDSKDEK 120 RTPGDTVTGI DSSQGLQIND ALRMQMEVQK RLHEQLEVQK QLQMRIEAQG KYLQKIIEEQ 180 QKLGSTLTNS DTLPLSHDKQ NNPPSEPSGS SDAIADSMSP LKKQRIDDGS KDGFAVSQVT 240 TKTSQKTDCS VDQLDS

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4k_A	4e-24	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j4k_B	4e-24	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_A	4e-24	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_C	4e-24	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_D	4e-24	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_F	4e-24	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_H	4e-24	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
6j5b_J	4e-24	47	105	1	59	Protein PHOSPHATE STARVATION RESPONSE 1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.U4ZBC

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016161873.1	0.0	myb family transcription factor PHL7 isoform X1
Refseq	XP_025658181.1	0.0	myb family transcription factor PHL7 isoform X1
Swissprot	Q9SJW0	1e-73	PHL7_ARATH; Myb family transcription factor PHL7
TrEMBL	A0A444YQL0	0.0	A0A444YQL0_ARAHY; Uncharacterized protein
STRING	XP_004493285.1	1e-153	(Cicer arietinum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF13013	23	30

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G01060.1	5e-76	G2-like family protein