PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Araip.UA0W9

Organism

Arachis ipaensis

Taxonomic ID

130454

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Fabales; Fabaceae; Papilionoideae; Dalbergieae; Arachis

Family

NAC

Protein Properties

Length: 277aa MW: 31797.9 Da PI: 6.8047

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Araip.UA0W9	genome	NCGR_PGC	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	180.9	3.2e-56	7	133	1	129
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 lppGfrFhPtdee++++yL++kv ++++++ ++i evd++k+ePwdLpkk+k +ek+wyfF +rd+ky+tg r+nrat+sgyWkatgkdke+++ +++ Araip.UA0W9 7 LPPGFRFHPTDEEIISYYLTHKVLNTSFTA-TAIGEVDLNKCEPWDLPKKAKMGEKDWYFFWQRDRKYPTGIRTNRATESGYWKATGKDKEIYK-GRN 102 79***********************999.88***********99999*************************************.999 PP NAM 99 lvglkktLvfykgrapkgektdWvmheyrle 129 lvg+kktLvfy+grap+g+kt+Wvmhe+rle Araip.UA0W9 103 LVGMKKTLVFYRGRAPNGHKTNWVMHEFRLE 133 **************************985 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	2.35E-61	4	158	IPR003441	NAC domain
PROSITE profile	PS51005	56.776	7	157	IPR003441	NAC domain
Pfam	PF02365	1.9E-28	8	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 277 aa Download sequence Send to blast
MDAALDLPPG FRFHPTDEEI ISYYLTHKVL NTSFTATAIG EVDLNKCEPW DLPKKAKMGE 60 KDWYFFWQRD RKYPTGIRTN RATESGYWKA TGKDKEIYKG RNLVGMKKTL VFYRGRAPNG 120 HKTNWVMHEF RLEGLFATYN LPIPAKEEWV VSRVFHKNTT EKLNPTIPSG LFRIMKNMNS 180 IGDDDLVDFS SLPPLMDPSN NYDDEHTTTT NNNYVNSMFA SSSDYNITIQ QNKKDMMGIR 240 NNNNNIRALL MYDGPSSSSS EVVAPPLSDL ELGLWDL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-50	5	162	15	170	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-50	5	162	15	170	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-50	5	162	15	170	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-50	5	162	15	170	NO APICAL MERISTEM PROTEIN
3swm_A	2e-50	5	162	18	173	NAC domain-containing protein 19
3swm_B	2e-50	5	162	18	173	NAC domain-containing protein 19
3swm_C	2e-50	5	162	18	173	NAC domain-containing protein 19
3swm_D	2e-50	5	162	18	173	NAC domain-containing protein 19
3swp_A	2e-50	5	162	18	173	NAC domain-containing protein 19
3swp_B	2e-50	5	162	18	173	NAC domain-containing protein 19
3swp_C	2e-50	5	162	18	173	NAC domain-containing protein 19
3swp_D	2e-50	5	162	18	173	NAC domain-containing protein 19
4dul_A	3e-50	5	162	15	170	NAC domain-containing protein 19
4dul_B	3e-50	5	162	15	170	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the promoter regions of genes involved in chlorophyll catabolic processes, such as NYC1, SGR1, SGR2 and PAO. {ECO:0000269\|PubMed:27021284}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Araip.UA0W9

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_016180674.1	0.0	NAC domain-containing protein 100 isoform X2
Refseq	XP_025685801.1	0.0	NAC domain-containing protein 87 isoform X2
Swissprot	Q9FK44	1e-100	NAC87_ARATH; NAC domain-containing protein 87
TrEMBL	A0A444XAC9	0.0	A0A444XAC9_ARAHY; Uncharacterized protein
STRING	AES80816	1e-109	(Medicago truncatula)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Fabids	OGEF409	34	171

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.1	1e-101	Arabidopsis NAC domain containing protein 87

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444]